Visualization of phage genomic data: Comparative genomics and publication-quality diagrams

Dann Turner; J. Mark Sutton; Darren M. Reynolds; Eby M. Sim; Nicola K. Petty

doi:10.1007/978-1-4939-7343-9_18

Visualization of phage genomic data: Comparative genomics and publication-quality diagrams

Dann Turner^*, J. Mark Sutton, Darren M. Reynolds, Eby M. Sim, Nicola K. Petty

^*Corresponding author for this work

Research & Development Institute Scientific Leaders

Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review

4 Citations (Scopus)

Abstract

The presentation of bacteriophage genomes as diagrams allows the location and organization of features to be communicated in a clear and effective manner. A wide range of software applications are available for the clear and accurate visualization of genomic data. Several of these applications incorporate comparative analysis tools, allowing for insertions, deletions, rearrangements and variations in syntenic regions to be visualized. In this chapter, freely available software and resources for the generation of high-quality graphical maps of bacteriophage genomes are listed and discussed.

Original language	English
Title of host publication	Methods in Molecular Biology
Publisher	Humana Press Inc.
Pages	239-260
Number of pages	22
DOIs	https://doi.org/10.1007/978-1-4939-7343-9_18
Publication status	Published - 1 Jan 2018

Publication series

Name	Methods in Molecular Biology
Volume	1681
ISSN (Print)	1064-3745

Bibliographical note

Publisher Copyright:
© 2018, Springer Science+Business Media LLC.

Keywords

Comparative genomics
Genomes
Phage
Software
Visualization

Access to Document

10.1007/978-1-4939-7343-9_18

Cite this

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AU - Petty, Nicola K.

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KW - Software

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Visualization of phage genomic data: Comparative genomics and publication-quality diagrams

Abstract

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Bibliographical note

Keywords

Access to Document

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