Field-deployable, quantitative, rapid identification of active Ebola virus infection in unprocessed blood

Kavit Shah, Emma Bentley, Adam Tyler, Kevin S.R. Richards, Edward Wright, Linda Easterbrook, Diane Lee, Claire Cleaver, Louise Usher, Jane E. Burton, James K. Pitman, Christine B. Bruce, David Edge, Martin Lee, Nelson Nazareth, David A. Norwood, Sterghios A. Moschos*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

6 Citations (Scopus)

Abstract

The West African Ebola virus outbreak underlined the importance of delivering mass diagnostic capability outside the clinical or primary care setting in effectively containing public health emergencies caused by infectious disease. Yet, to date, there is no solution for reliably deploying at the point of need the gold standard diagnostic method, real time quantitative reverse transcription polymerase chain reaction (RT-qPCR), in a laboratory infrastructure-free manner. In this proof of principle work, we demonstrate direct performance of RT-qPCR on fresh blood using far-red fluorophores to resolve fluorogenic signal inhibition and controlled, rapid freeze/thawing to achieve viral genome extraction in a single reaction chamber assay. The resulting process is entirely free of manual or automated sample pre-processing, requires no microfluidics or magnetic/mechanical sample handling and thus utilizes low cost consumables. This enables a fast, laboratory infrastructure-free, minimal risk and simple standard operating procedure suited to frontline, field use. Developing this novel approach on recombinant bacteriophage and recombinant human immunodeficiency virus (HIV; Lentivirus), we demonstrate clinical utility in symptomatic EBOV patient screening using live, infectious Filoviruses and surrogate patient samples. Moreover, we evidence assay co-linearity independent of viral particle structure that may enable viral load quantification through pre-calibration, with no loss of specificity across an 8log-linear maximum dynamic range. The resulting quantitative rapid identification (QuRapID) molecular diagnostic platform, openly accessible for assay development, meets the requirements of resource-limited countries and provides a fast response solution for mass public health screening against emerging biosecurity threats.

Original languageEnglish
Pages (from-to)7780-7797
Number of pages18
JournalChemical Science
Volume8
Issue number11
DOIs
Publication statusPublished - 2017

Bibliographical note

Funding Information:
We extend our thanks to Mrs Lindsay Rudd, Dr John Murphy and Professor Jane Lewis for their continuous support and constructive input in the management of this work. We also acknowledge the valuable regional insight of Dr Clement Opoku-Okrah and Dr Alex-Yaw Debrah in regulatory affairs, politics, sociological/anthropological input to system/SOP design and preparation for in-country testing of platform robustness in a laboratory infrastructure-free manner. The EbolaCheck project was funded by grant no. 13335 of the Research for Health in Humanitarian Crises (R2HC) Programme managed by ELRHA. The Research for Health in Humanitarian Crises (R2HC) programme aims to improve health outcomes by strengthening the evidence base for public health interventions in humanitarian crises. Visit http:// www.elrha.org/work/r2hc for more information. The £8 million R2HC programme is funded equally by the Wellcome Trust and DFID, with Enhancing Learning and Research for Humanitarian Assistance (ELRHA) overseeing the programme's execution and management.

Publisher Copyright:
© 2017 The Royal Society of Chemistry.

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