Erratum: Multilocus sequence typing as a replacement for serotyping in salmonella enterica (PLoS Pathogens (2012) 8:6 (e1002776) DOI: 10.1371/journal.ppat.1002776)

Mark Achtman; John Wain; François Xavier Weill; Satheesh Nair; Zhemin Zhou; Vartul Sangal; Mary G. Krauland; James L. Hale; Heather Harbottle; Alexandra Uesbeck; Gordon Dougan; Lee H. Harrison; Sylvain Brisse

doi:10.1371/journal.ppat.1009040

Erratum: Multilocus sequence typing as a replacement for serotyping in salmonella enterica (PLoS Pathogens (2012) 8:6 (e1002776) DOI: 10.1371/journal.ppat.1002776)

Mark Achtman, John Wain, François Xavier Weill, Satheesh Nair, Zhemin Zhou, Vartul Sangal, Mary G. Krauland, James L. Hale, Heather Harbottle, Alexandra Uesbeck, Gordon Dougan, Lee H. Harrison, Sylvain Brisse

Gastrointestinal Bacteria WGS

Research output: Contribution to journal › Comment/debate

Abstract

Some URLs within the article are now inactive. The MLST website at University College Cork moved to University of Warwick in 2013 and was subsequently superseded by EnteroBase, which can be accessed at http://enterobase. warwick.ac.uk [2]. EnteroBase offers MLST genotyping on the basis of genomic short reads for all levels of MLST from 7-gene legacy MLST through core genome cgMLST to whole genome wgMLST. However, it no longer accepts new alleles based on ABI sequences as explained due to their excessive error rate. Allelic designations for sequences of 7-gene legacy MLST loci for Salmonella enterica, Escherichia coli, Yersinia pseudotuberculosis and Moraxella catarrhalis can be obtained from EnteroBase at http:// enterobase.warwick.ac.uk/warwick_mlst_legacy. The authors, however, now recommend using short read sequencing which is handled at http://enterobase.warwick.ac.uk [2]. Another URL in the original publication at PubMLST is now also no longer operative, and a general overview of MLST databases in general can be found at https://pubmlst.org/ organisms.

Original language	English
Article number	e1009040
Journal	PLoS Pathogens
Volume	16
Issue number	10
DOIs	https://doi.org/10.1371/journal.ppat.1009040
Publication status	Published - 21 Oct 2020

Bibliographical note

Publisher Copyright:
© 2020 Achtman et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

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Achtman, M., Wain, J., Weill, F. X., Nair, S., Zhou, Z., Sangal, V., Krauland, M. G., Hale, J. L., Harbottle, H., Uesbeck, A., Dougan, G., Harrison, L. H., & Brisse, S. (2020). Erratum: Multilocus sequence typing as a replacement for serotyping in salmonella enterica (PLoS Pathogens (2012) 8:6 (e1002776) DOI: 10.1371/journal.ppat.1002776). PLoS Pathogens, 16(10), [e1009040]. https://doi.org/10.1371/journal.ppat.1009040

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title = "Erratum: Multilocus sequence typing as a replacement for serotyping in salmonella enterica (PLoS Pathogens (2012) 8:6 (e1002776) DOI: 10.1371/journal.ppat.1002776)",

abstract = "Some URLs within the article are now inactive. The MLST website at University College Cork moved to University of Warwick in 2013 and was subsequently superseded by EnteroBase, which can be accessed at http://enterobase. warwick.ac.uk [2]. EnteroBase offers MLST genotyping on the basis of genomic short reads for all levels of MLST from 7-gene legacy MLST through core genome cgMLST to whole genome wgMLST. However, it no longer accepts new alleles based on ABI sequences as explained due to their excessive error rate. Allelic designations for sequences of 7-gene legacy MLST loci for Salmonella enterica, Escherichia coli, Yersinia pseudotuberculosis and Moraxella catarrhalis can be obtained from EnteroBase at http:// enterobase.warwick.ac.uk/warwick_mlst_legacy. The authors, however, now recommend using short read sequencing which is handled at http://enterobase.warwick.ac.uk [2]. Another URL in the original publication at PubMLST is now also no longer operative, and a general overview of MLST databases in general can be found at https://pubmlst.org/ organisms.",

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Achtman, M, Wain, J, Weill, FX, Nair, S, Zhou, Z, Sangal, V, Krauland, MG, Hale, JL, Harbottle, H, Uesbeck, A, Dougan, G, Harrison, LH & Brisse, S 2020, 'Erratum: Multilocus sequence typing as a replacement for serotyping in salmonella enterica (PLoS Pathogens (2012) 8:6 (e1002776) DOI: 10.1371/journal.ppat.1002776)', PLoS Pathogens, vol. 16, no. 10, e1009040. https://doi.org/10.1371/journal.ppat.1009040

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AU - Harrison, Lee H.

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Erratum: Multilocus sequence typing as a replacement for serotyping in salmonella enterica (PLoS Pathogens (2012) 8:6 (e1002776) DOI: 10.1371/journal.ppat.1002776)

Abstract

Bibliographical note

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