Development of a Bioinformatics Framework for Identification and Validation of Genomic Biomarkers and Key Immunopathology Processes and Controllers in Infectious and Non-infectious Severe Inflammatory Response Syndrome

Dong Ling Tong, Karen E. Kempsell, Tamas Szakmany*, Graham Ball

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

5 Citations (Scopus)

Abstract

Sepsis is defined as dysregulated host response caused by systemic infection, leading to organ failure. It is a life-threatening condition, often requiring admission to an intensive care unit (ICU). The causative agents and processes involved are multifactorial but are characterized by an overarching inflammatory response, sharing elements in common with severe inflammatory response syndrome (SIRS) of non-infectious origin. Sepsis presents with a range of pathophysiological and genetic features which make clinical differentiation from SIRS very challenging. This may reflect a poor understanding of the key gene inter-activities and/or pathway associations underlying these disease processes. Improved understanding is critical for early differential recognition of sepsis and SIRS and to improve patient management and clinical outcomes. Judicious selection of gene biomarkers suitable for development of diagnostic tests/testing could make differentiation of sepsis and SIRS feasible. Here we describe a methodologic framework for the identification and validation of biomarkers in SIRS, sepsis and septic shock patients, using a 2-tier gene screening, artificial neural network (ANN) data mining technique, using previously published gene expression datasets. Eight key hub markers have been identified which may delineate distinct, core disease processes and which show potential for informing underlying immunological and pathological processes and thus patient stratification and treatment. These do not show sufficient fold change differences between the different disease states to be useful as primary diagnostic biomarkers, but are instrumental in identifying candidate pathways and other associated biomarkers for further exploration.

Original languageEnglish
Article number380
JournalFrontiers in Immunology
Volume11
DOIs
Publication statusPublished - 31 Mar 2020

Bibliographical note

Funding Information:
We acknowledge Carrie Turner and Mark Sutton for assistance with compiling and proof-reading the manuscript. Funding. This study was funded by UKRI (formerly Innovate UK/Technology Strategy Board) grant number 101191, the Department of Health (DH), and Public Health England (PHE).

Publisher Copyright:
© Copyright © 2020 Tong, Kempsell, Szakmany and Ball.

Keywords

  • SIRS
  • adult
  • artificial neural network (ANN)
  • biomarker
  • gene interaction
  • pediatric
  • sepsis

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