CLIMB (the Cloud Infrastructure for Microbial Bioinformatics): an online resource for the medical microbiology community

Thomas R. Connor, Nicholas J. Loman, Simon Thompson, Andy Smith, Joel Southgate, Radoslaw Poplawski, Matthew J. Bull, Emily Richardson, Matthew Ismail, Simon Elwood Thompson, Christine Kitchen, Martyn Guest, Marius Bakke, Samuel K. Sheppard, Mark J. Pallen

Research output: Contribution to journalArticlepeer-review

77 Citations (Scopus)

Abstract

The increasing availability and decreasing cost of high-throughput sequencing has transformed academic medical microbiology, delivering an explosion in available genomes while also driving advances in bioinformatics. However, many microbiologists are unable to exploit the resulting large genomics datasets because they do not have access to relevant computational resources and to an appropriate bioinformatics infrastructure. Here, we present the Cloud Infrastructure for Microbial Bioinformatics (CLIMB) facility, a shared computing infrastructure that has been designed from the ground up to provide an environment where microbiologists can share and reuse methods and data.

Original languageEnglish
Pages (from-to)e000086
JournalMicrobial Genomics
Volume2
Issue number9
DOIs
Publication statusPublished - 1 Sep 2016
Externally publishedYes

Keywords

  • bioinformatics
  • cloud computing
  • infrastructure
  • metagenomics
  • population genomics
  • virtual laboratory

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