An application of nowcasting methods: Cases of norovirus during the winter 2023/2024 in England

Jonathon Mellor*, Maria L. Tang, Emilie Finch, Rachel Christie, Oliver Polhill, Christopher E. Overton, Ann Hoban, Amy Douglas, Sarah R. Deeny, Thomas Ward

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

Abstract

Background Norovirus is a leading cause of acute gastroenteritis, adding to strain on healthcare systems. Diagnostic test reporting of norovirus is often delayed, resulting in incomplete data for real-time surveillance. Methods To nowcast the real-time case burden of norovirus a generalised additive model (GAM), semi-mechanistic Bayesian joint process and delay model “epinowcast”, and Bayesian structural time series (BSTS) model including syndromic surveillance data were developed. These models were evaluated over weekly nowcasts using a probabilistic scoring framework. Results Using the weighted interval score (WIS) we show a heuristic approach is outperformed by models harnessing time delay corrections, with daily mean WIS = 7.73, 3.03, 2.29 for the baseline, “epinowcast”, and GAM, respectively. Forecasting approaches were reliable in the event of temporally changing reporting values, with WIS = 4.57 for the BSTS model. However, the syndromic surveillance (111 online pathways) did not improve the BSTS model, WIS = 10.28, potentially indicating poor correspondence between surveillance indicators. Interpretation Analysis of surveillance data enhanced by nowcasting delayed reporting improves understanding over simple model assumptions, important for real-time decision making. The modelling approach needs to be informed by the patterns of the reporting delay and can have large impacts on operational performance and insights produced.

Original languageEnglish
Article numbere1012849
JournalPLoS Computational Biology
Volume21
Issue number2
DOIs
Publication statusPublished - Feb 2025

Bibliographical note

Publisher Copyright:
© 2025 Mellor et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

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