A toolkit for analysing large-scale plant small RNA datasets

Simon Moxon, Frank Schwach, Tamas Dalmay, Dan MacLean, David J. Studholme, Vincent Moulton*

*Corresponding author for this work

Research output: Contribution to journalArticlepeer-review

212 Citations (Scopus)

Abstract

Recent developments in high-throughput sequencing technologies have generated considerable demand for tools to analyse large datasets of small RNA sequences. Here, we describe a suite of web-based tools for processing plant small RNA datasets. Our tools can be used to identify micro RNAs and their targets, compare expression levels in sRNA loci, and find putative trans-acting siRNA loci.

Original languageEnglish
Pages (from-to)2252-2253
Number of pages2
JournalBioinformatics
Volume24
Issue number19
DOIs
Publication statusPublished - Oct 2008
Externally publishedYes

Bibliographical note

Funding Information:
Funding: This work was supported by the Biotechnology and Biological Sciences Research Council [grant number BB/E004091/1] and the Gatsby Charitable Foundation (to D.M. and D.J.S.).

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