A toolkit for analysing large-scale plant small RNA datasets

Simon Moxon; Frank Schwach; Tamas Dalmay; Dan MacLean; David J. Studholme; Vincent Moulton

doi:10.1093/bioinformatics/btn428

A toolkit for analysing large-scale plant small RNA datasets

Simon Moxon, Frank Schwach, Tamas Dalmay, Dan MacLean, David J. Studholme, Vincent Moulton^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › peer-review

235 Citations (Scopus)

Abstract

Recent developments in high-throughput sequencing technologies have generated considerable demand for tools to analyse large datasets of small RNA sequences. Here, we describe a suite of web-based tools for processing plant small RNA datasets. Our tools can be used to identify micro RNAs and their targets, compare expression levels in sRNA loci, and find putative trans-acting siRNA loci.

Original language	English
Pages (from-to)	2252-2253
Number of pages	2
Journal	Bioinformatics
Volume	24
Issue number	19
DOIs	https://doi.org/10.1093/bioinformatics/btn428
Publication status	Published - Oct 2008
Externally published	Yes

Bibliographical note

Funding Information:
Funding: This work was supported by the Biotechnology and Biological Sciences Research Council [grant number BB/E004091/1] and the Gatsby Charitable Foundation (to D.M. and D.J.S.).

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abstract = "Recent developments in high-throughput sequencing technologies have generated considerable demand for tools to analyse large datasets of small RNA sequences. Here, we describe a suite of web-based tools for processing plant small RNA datasets. Our tools can be used to identify micro RNAs and their targets, compare expression levels in sRNA loci, and find putative trans-acting siRNA loci.",

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AU - Moulton, Vincent

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AB - Recent developments in high-throughput sequencing technologies have generated considerable demand for tools to analyse large datasets of small RNA sequences. Here, we describe a suite of web-based tools for processing plant small RNA datasets. Our tools can be used to identify micro RNAs and their targets, compare expression levels in sRNA loci, and find putative trans-acting siRNA loci.

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A toolkit for analysing large-scale plant small RNA datasets

Abstract

Bibliographical note

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