A Shiga Toxin-Encoding Prophage Recombination Event Confounds the Phylogenetic Relationship Between Two Isolates of Escherichia coli O157:H7 From the Same Patient

Keyphrases

• Phylogenetic Relationship 100%
• Escherichia Coli O157 100%
• Prophage 100%
• Same Patient 100%
• Recombination Event 100%
• Shiga Toxin 100%
• Single nucleotide Polymorphism 60%
• Reference Genome 60%
• Public Health Surveillance 40%
• Short Reads 40%
• Prophage Regions 40%
• Shiga Toxin-producing Escherichia Coli O157:H7 40%
• Public Health England 20%
• Evolutionary 20%
• Phylogenetic Analysis 20%
• Accessory Genome 20%
• Point Source 20%
• Serial Isolates 20%
• Insertion-deletion 20%
• Stx2a 20%
• Impact Event 20%
• Long-read Technology 20%
• Multiple Isolation 20%
• Host Variation 20%
• Neutral Selection 20%

Immunology and Microbiology

• Escherichia Coli O157:H7 100%
• Prophage 100%
• Shiga Toxin 100%
• Single Nucleotide Polymorphism 50%
• Verotoxin-Producing Escherichia Coli 33%
• Indel Mutation 16%
• Masking 16%
• Cladistics 16%

Biochemistry, Genetics and Molecular Biology

• Prophage 100%
• Escherichia Coli O157 100%
• Shiga Toxin 100%
• Single-Nucleotide Polymorphism 50%
• Shiga Toxin Producing Escherichia Coli 33%
• Indel 16%
• Masking 16%
• Cladistics 16%