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• 2022

  A2B-COVID: A Tool for Rapidly Evaluating Potential SARS-CoV-2 Transmission Events

  Illingworth, C. J. R., Hamilton, W. L., Jackson, C., Warne, B., Popay, A., Meredith, L., Hosmillo, M., Jahun, A., Fieldman, T., Routledge, M., Houldcroft, C. J., Caller, L., Caddy, S., Yakovleva, A., Hall, G., Khokhar, F. A., Feltwell, T., Pinckert, M. L., Georgana, I., Chaudhry, Y. & 19 others, Curran, M., Parmar, S., Sparkes, D., Rivett, L., Jones, N. K., Sridhar, S., Forrest, S., Dymond, T., Grainger, K., Workman, C., Gkrania-Klotsas, E., Brown, N. M., Weekes, M. P., Baker, S., Peacock, S. J., Gouliouris, T., Goodfellow, I., De Angelis, D. & Estee Török, M., 2 Mar 2022, In: Molecular Biology and Evolution. 39, 3, 14 p., 025.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Aberrant stromal tissue factor localisation and mycolactone-driven vascular dysfunction, exacerbated by IL-1β, are linked to fibrin formation in Buruli ulcer lesions

  Hsieh, L. T. H., Dos Santos, S. J., Hall, B. S., Ogbechi, J., Loglo, A. D., Salguero, F. J., Ruf, M. T., Pluschke, G. & Simmonds, R. E., 31 Jan 2022, In: PLoS Pathogens. 18, 1, e1010280.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• A blood atlas of COVID-19 defines hallmarks of disease severity and specificity

  COvid-19 Multi-omics Blood ATlas (COMBAT) Consortium, 3 Mar 2022, In: Cell. 185, 5, p. 916-938.e58 82 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  3 Citations (Scopus)

• Absolute quantitation of individual SARS-CoV-2 RNA molecules provides a new paradigm for infection dynamics and variant differences

  Lee, J. Y., Wing, P. A. C., Gala, D. S., Noerenberg, M., Järvelin, A. I., Titlow, J., Zhuang, X., Palmalux, N., Iselin, L., Thompson, M. K., Parton, R. M., Prange-Barczynska, M., Wainman, A., Salguero, F. J., Bishop, T., Agranoff, D., James, W., Castello, A., McKeating, J. A. & Davis, I., 20 Jan 2022, In: eLife. 11, e74153.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  1 Citation (Scopus)

  1 Downloads (Pure)

• A case of avian influenza A(H5N1) in England, January 2022

  Oliver, I., Roberts, J., Brown, C. S., Byrne, A. M., Mellon, D., Hansen, R. DE., Banyard, A. C., James, J., Donati, M., Porter, R., Ellis, J., Cogdale, J., Lackenby, A., Chand, M., Dabrera, G., Brown, I. H. & Zambon, M., 3 Feb 2022, In: Eurosurveillance. 27, 5, 5 p., 2200061.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Citation (Scopus)

• Acceptability of, and barriers and facilitators to, a pilot physical health service for people who inject drugs: A qualitative study with service users and providers

  Anderson, N. C., Kesten, J. M., Ayres, R., Hickman, M., Amlôt, R., Michie, S. & Lorencatto, F., Jan 2022, In: International Journal of Drug Policy. 99, 103437.

  Research output: Contribution to journal › Article › peer-review

• Access and benefit-sharing by the European Virus Archive in response to COVID-19

  European Virus Archive principal investigators, Apr 2022, In: The Lancet Microbe. 3, 4, p. e316-e323

  Research output: Contribution to journal › Review article › peer-review

  Open Access

• A coherent framework for non-ionising radiation protection

  Tinker, R., Abramowicz, J., Karabetsos, E., Magnusson, S., Matthes, R., Moser, M., Niu, S., O'Hagan, J. & Van Deventer, E., 12 Jan 2022, In: Journal of Radiological Protection. 42, 1, 9 p., 010501.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• A common framework for using and reporting consumer purchase data (CPD) in foodborne outbreak investigations in Europe

  Jore, S., Braae, U. C., Trier Møller, F., Friesema, I., Paranthaman, K., Jalava, K., Jourdan-DaSilva, N., Löf, E., Rehn, M. & Ethelberg, S., 2022, In: Infection Ecology and Epidemiology. 12, 1, 2007828.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  1 Citation (Scopus)

  3 Downloads (Pure)

• A Crossover Randomized Controlled Trial of Priming Interventions to Increase Hand Hygiene at Ward Entrances

  Schmidtke, K. A., Aujla, N., Marshall, T., Hussain, A., Hodgkinson, G. P., Arheart, K. L., Birnbach, D. J., Kudrna, L. & Vlaev, I., 17 Jan 2022, In: Frontiers in Public Health. 9, 781359.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Acute Leg Ischaemia: Call to Arms

  Whitman, B. & Earnshaw, J., Feb 2022, In: European Journal of Vascular and Endovascular Surgery. 63, 2, p. 304 1 p.

  Research output: Contribution to journal › Comment/debate

• Adenovirus vectors activate Vδ2⁺ γδT cells in a type I interferon-, TNF-, and IL-18-dependent manner

  Provine, N. M., Amini, A., Garner, L. C., FitzPatrick, M. E. B., Dold, C., Silva Reyes, L., Chinnakannan, S., Oguti, B., Raymond, M., Troise, F., Capone, S., Folgori, A., Barnes, E., Rollier, C. S., Pollard, A. J. & Klenerman, P., 2022, (Accepted/In press) In: European Journal of Immunology.

  Research output: Contribution to journal › Comment/debate

  Open Access

• Adherence to protective measures among healthcare workers in the UK: a cross-sectional study

  Smith, L. E., Serfioti, D., Weston, D., Greenberg, N. & Rubin, G. J., 20 Jan 2022, In: Emergency Medicine Journal. 39, 2, p. 100-105 6 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  2 Citations (Scopus)

• Adjuvant and neoadjuvant breast cancer treatments: A systematic review of their effects on mortality

  Kerr, A. J., Dodwell, D., McGale, P., Holt, F., Duane, F., Mannu, G., Darby, S. C. & Taylor, C. W., Apr 2022, In: Cancer Treatment Reviews. 105, 102375.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

• Advances and gaps in SARS-CoV-2 infection models

  Muñoz-Fontela, C., Widerspick, L., Albrecht, R. A., Beer, M., Carroll, M. W., de Wit, E., Diamond, M. S., Dowling, W. E., Funnell, S. G. P., García-Sastre, A., Gerhards, N. M., de Jong, R., Munster, V. J., Neyts, J., Perlman, S., Reed, D. S., Richt, J. A., Riveros-Balta, X., Roy, C. J., Salguero, F. J. & 7 others, Schotsaert, M., Schwartz, L. M., Seder, R. A., Segalés, J., Vasan, S. S., Henao-Restrepo, A. M. & Barouch, D. H., 13 Jan 2022, In: PLoS Pathogens. 18, 1, e1010161.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  File
  3 Citations (Scopus)

• Adverse Events of Interest Following Influenza Vaccination in the First Season of Adjuvanted Trivalent Immunization: Retrospective Cohort Study

  De Lusignan, S., Tsang, R. S. M., Akinyemi, O., Bernal, J. L., Amirthalingam, G., Sherlock, J., Smith, G., Zambon, M., Howsam, G. & Joy, M., 28 Mar 2022, In: JMIR Public Health and Surveillance. 8, 3, e25803.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  2 Downloads (Pure)

• A feasibility study evaluating the uptake, effectiveness and acceptability of routine screening of pregnant migrants for latent tuberculosis infection in antenatal care: a research protocol

  Rahman, A., Thangaratinam, S., Copas, A., Zenner, D., White, P. J., Griffiths, C., Abubakar, I., McCourt, C. & Kunst, H., 4 Apr 2022, In: BMJ Open. 12, 4, e058734.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• A Gonococcal Vaccine Has the Potential to Rapidly Reduce the Incidence of Neisseria gonorrhoeae Infection among Urban Men Who Have Sex with Men

  Hui, B. B., Padeniya, T. N., Rebuli, N., Gray, R. T., Wood, J. G., Donovan, B., Duan, Q., Guy, R., Hocking, J. S., Lahra, M. M., Lewis, D. A., Whiley, D. M., Regan, D. G. & Seib, K. L., 15 Mar 2022, In: Journal of Infectious Diseases. 225, 6, p. 983-993 11 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  1 Citation (Scopus)

• Analysis and results from a UK national dose audit of paediatric CT examinations

  Worrall, M., Holubinka, M., Havariyoun, G., Hodgson, K., Edyvean, S., Holroyd, J., Davis, A., Dunn, M. & Gardiner, A., Jan 2022, In: British Journal of Radiology. 95, 1129, 13 p.

  Research output: Contribution to journal › Article › peer-review

• An internally validated prediction model for critical COVID-19 infection and intensive care unit admission in symptomatic pregnant women

  Kalafat, E., Prasad, S., Birol, P., Tekin, A. B., Kunt, A., Di Fabrizio, C., Alatas, C., Celik, E., Bagci, H., Binder, J., Le Doare, K., Magee, L. A., Mutlu, M. A., Yassa, M., Tug, N., Sahin, O., Krokos, P., O'brien, P., von Dadelszen, P., Palmrich, P. & 6 others, Papaioannou, G., Ayaz, R., Ladhani, S. N., Kalantaridou, S., Mihmanli, V. & Khalil, A., 5 Mar 2022, In: American Journal of Obstetrics and Gynecology. 226, 3, p. 403.e1-403.e13

  Research output: Contribution to journal › Article › peer-review

  Open Access
  4 Citations (Scopus)

• An Observational Cohort Study on the Incidence of Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Infection and B.1.1.7 Variant Infection in Healthcare Workers by Antibody and Vaccination Status

  Oxford University Hospitals Staff Testing Group , 9 Apr 2022, In: Clinical Infectious Diseases. 74, 7, p. 1208-1219 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access
  8 Citations (Scopus)

• Antibiotic resistance among clinical Ureaplasma isolates from Cuban individuals between 2013 and 2018

  Preval, N. M. R., Spiller, O. B., Mondeja Rodríguez, B. A., Morales, R. S., Cintra, Y. R. & Rivera-Tapia, J. A., 1 Feb 2022, In: Journal of Medical Microbiology. 71, 2

  Research output: Contribution to journal › Article › peer-review

• Antibody responses and correlates of protection in the general population after two doses of the ChAdOx1 or BNT162b2 vaccines

  the COVID-19 Infection Survey team, Wei, J., Pouwels, K. B., Stoesser, N., Matthews, P. C., Diamond, I., Studley, R., Rourke, E., Cook, D., Bell, J. I., Newton, J. N., Farrar, J., Howarth, A., Marsden, B. D., Hoosdally, S., Jones, E. Y., Stuart, D. I., Crook, D. W., Peto, T. E. A., Walker, A. S. & 1 others, Eyre, D. W., 14 Feb 2022, In: Nature Medicine.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  3 Citations (Scopus)

  1 Downloads (Pure)

• Antimicrobial resistance in bacterial sexually transmitted infections

  Pitt, R. & Fifer, H., May 2022, In: Medicine (United Kingdom). 50, 5, p. 277-279 3 p.

  Research output: Contribution to journal › Review article › peer-review

• A One-Shot Shift from Explore to Exploit in Monkey Prefrontal Cortex

  Achterberg, J., Kadohisa, M., Watanabe, K., Kusunoki, M., Buckley, M. J. & Duncan, J., 12 Jan 2022, In: Journal of Neuroscience. 42, 2, p. 276-287 12 p.

  Research output: Contribution to journal › Article › peer-review

• Application of Game Theory to Orthopaedic Surgery

  Brown, N. M., Killen, C. J. & Schneider, A. M., 15 Feb 2022, In: The Journal of the American Academy of Orthopaedic Surgeons. 30, 4, p. 155-160 6 p.

  Research output: Contribution to journal › Article › peer-review

• Assessing the added value of group B Streptococcus maternal immunisation in preventing maternal infection and fetal harm: population surveillance study

  Lamagni, T., Wloch, C., Broughton, K., Collin, S. M., Chalker, V., Coelho, J., Ladhani, S. N., Brown, C. S., Shetty, N. & Johnson, A. P., Jan 2022, In: BJOG: An International Journal of Obstetrics and Gynaecology. 129, 2, p. 233-240 8 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  3 Downloads (Pure)

• Assessment of online self-testing and self-sampling service providers for sexually transmitted infections against national standards in the UK in 2020

  Clarke, E., Horner, P. J., Muir, P., Turner, K. M. E. & Harding-Esch, E. M., 12 Apr 2022, (E-pub ahead of print) In: Sexually Transmitted Infections.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File

• Assessment of Rapid Diagnostic Tests for Typhoid Diagnosis and Assessment of Febrile Illness Outbreaks in Fiji

  Strobel, A. G., Airs, S., Nguyen, C., Rokobuli Vadei, T., Matanitobua, S., Kama, M., Watson, C. H., Crump, J. A., Mulholland, E. K., Strugnell, R. A. & Parry, C. M., Feb 2022, In: American Journal of Tropical Medicine and Hygiene. 106, 2, p. 543-549 7 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Assessment of the Light Exposures of Shift-working Nurses in London and Dortmund in Relation to Recommendations for Sleep and Circadian Health

  Price, L. L. A., Khazova, M. & Udovičić, L., 22 Apr 2022, In: Annals of work exposures and health. 66, 4, p. 447-458 12 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Assessment of the Light Exposures of Shift-working Nurses in London and Dortmund in Relation to Recommendations for Sleep and Circadian Health (vol 66, pg 133, 2022): Assessment of the Light Exposures of Shift-working Nurses in London and Dortmund in Relation to Recommendations for Sleep and Circadian Health

  Price, L. L. A., Khazova, M. & Udovičić, L., 7 Jan 2022, In: Annals of work exposures and health. 66, 1, p. 133-135 3 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Assessment of the Microbiological Quality and Safety of Unpasteurized Milk Cheese for Sale in England between 2019 and 2020

  Willis, C., McLauchlin, J., Aird, H., Jørgensen, F., Lai, S. & Sadler-Reeves, L., Feb 2022, In: Journal of Food Protection. 85, 2, p. 278-286 9 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

  File
  2 Downloads (Pure)

• Association between Noise Annoyance and Mental Health Outcomes: A Systematic Review and Meta-Analysis

  Gong, X., Fenech, B., Blackmore, C., Chen, Y., Rodgers, G., Gulliver, J. & Hansell, A. L., 25 Feb 2022, In: International Journal of Environmental Research and Public Health. 19, 5, 2696.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

  File

• Association of Markers of Inflammation, the Kynurenine Pathway and B Vitamins with Age and Mortality, and a Signature of Inflammaging

  Dugue, P. A., Hodge, A. M., Ulvik, A., Ueland, P. M., Midttun, O., Rinaldi, S., MacInnis, R. J., Li, S. X., Meyer, K., Navionis, A. S., Flicker, L., Severi, G., English, D. R., Vineis, P., Tell, G. S., Southey, M. C., Milne, R. L. & Giles, G. G., 1 Apr 2022, In: Journals of Gerontology - Series A Biological Sciences and Medical Sciences. 77, 4, p. 826-836 11 p.

  Research output: Contribution to journal › Article › peer-review
  1 Citation (Scopus)

• Associations with sub-optimal clinic attendance and reasons for missed appointments among heterosexual women and men living with HIV in London

  Howarth, A. R., Apea, V., Michie, S., Morris, S., Sachikonye, M., Mercer, C. H., Evans, A., Delpech, V. C., Sabin, C. & Burns, F. M., 2022, (Accepted/In press) In: AIDS and Behavior.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• A summary of the updated report on the incidence and epidemiological trends of keratinocyte cancers in the UK 2013–2018

  Kwiatkowska, M., Ahmed, S., Ardern-Jones, M. R., Bhatti, L. A., Bleiker, T. O., Gavin, A., Hussain, S., Huws, D. W., Irvine, L., Langan, S. M., Millington, G. W. M., Mitchell, H., Murphy, R., Paley, L., Proby, C. M., Thomson, C. S., Thomas, R., Turner, C., Vernon, S. & Venables, Z. C., Feb 2022, In: British Journal of Dermatology. 186, 2, p. 367-369 3 p.

  Research output: Contribution to journal › Letter › peer-review

  Open Access
  1 Citation (Scopus)

• A Systematic Review of Nudge Interventions to Optimize Medication Prescribing

  Talat, U., Schmidtke, K. A., Khanal, S., Chan, A., Turner, A., Horne, R., Chadborn, T., Gold, N., Sallis, A. & Vlaev, I., 25 Jan 2022, In: Frontiers in Pharmacology. 13, 13 p., 798916.

  Research output: Contribution to journal › Review article › peer-review

  Open Access

• A systematic review of outdoor airborne fungal spore seasonality across Europe and the implications for health

  Anees-Hill, S., Douglas, P., Pashley, C. H., Hansell, A. & Marczylo, E. L., 20 Apr 2022, In: Science of the Total Environment, The. 818, 151716.

  Research output: Contribution to journal › Review article › peer-review

  Open Access
  4 Citations (Scopus)

• A systematic review on solid fuel combustion exposure and respiratory health in adults in Europe, USA, Canada, Australia and New Zealand

  Guercio, V., Doutsi, A. & Exley, K. S., Apr 2022, In: International Journal of Hygiene and Environmental Health. 241, 113926.

  Research output: Contribution to journal › Review article › peer-review

• Autochthonous tick-borne encephalitis in the United Kingdom: A second probable human case and local eco-epidemiological findings

  Mansbridge, C. T., Osborne, J., Holding, M., Dryden, M., Aram, M., Brown, K. & Sutton, J., Jan 2022, In: Ticks and Tick-borne Diseases. 13, 1, 101853.

  Research output: Contribution to journal › Article › peer-review

• Automated room decontamination: report of a Healthcare Infection Society Working Party

  Beswick, A. J., Fry, C., Bradley, C. R., Pottage, T., Sharpe, S., Haill, C. F., Mugglestone, M. A., Bak, A., Marsden, G. L., Bennett, A., Garvey, M. & Wilson, A. P. R., 2022, (Accepted/In press) In: Journal of Hospital Infection.

  Research output: Contribution to journal › Short survey › peer-review

  Open Access

• Barriers to management of opioid withdrawal in hospitals in England: a document analysis of hospital policies on the management of substance dependence

  Harris, M., Holland, A., Lewer, D., Brown, M., Eastwood, N., Sutton, G., Sansom, B., Cruickshank, G., Bradbury, M., Guest, I. & Scott, J., Dec 2022, In: BMC Medicine. 20, 1, 151.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• BASHH updated position statement on doxycycline as prophylaxis for sexually transmitted infections

  Kohli, M., Medland, N., Fifer, H. & Saunders, J., 1 May 2022, In: Sexually Transmitted Infections. 98, 3, p. 235-236 2 p.

  Research output: Contribution to journal › Editorial

  Open Access

• Binding antibody levels to vaccine (HPV6/11/16/18) and non-vaccine (HPV31/33/45/52/58) HPV antigens up to 7 years following immunization with either Cervarix® or Gardasil® vaccine

  Panwar, K., Godi, A., Cocuzza, C. E., Andrews, N., Southern, J., Turner, P., Miller, E. & Beddows, S., 23 Feb 2022, In: Vaccine. 40, 9, p. 1198-1202 5 p.

  Research output: Contribution to journal › Article › peer-review

• Biofilms in tuberculosis: What have we learnt in the past decade and what is still unexplored?

  Bacon, J., Waddell, S. J. & Flores-Valdez, M. A., Jan 2022, In: Tuberculosis. 132, 102153.

  Research output: Contribution to journal › Comment/debate

• Biomarker identification using dynamic time warping analysis: A longitudinal cohort study of patients with COVID-19 in a UK tertiary hospital

  REACT COVID group, 15 Feb 2022, In: BMJ Open. 12, 2, e050331.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• B Part of It School Leaver Study: A Repeat Cross-Sectional Study to Assess the Impact of Increasing Coverage with Meningococcal B (4CMenB) Vaccine on Carriage of Neisseria meningitidis

  McMillan, M., Koehler, A. P., Lawrence, A., Sullivan, T. R., Bednarz, J., MacLennan, J. M., Maiden, M. C. J., Ladhani, S. N., Ramsay, M. E., Trotter, C., Borrow, R., Finn, A., Kahler, C. M., Whelan, J., Vadivelu, K., Richmond, P. C. & Marshall, H. S., 15 Feb 2022, In: Journal of Infectious Diseases. 225, 4, p. 637-649 13 p.

  Research output: Contribution to journal › Article › peer-review

• British Gynaecological Cancer Society Recommendations for Women with Gynecological Cancer Who Received Non-standard Care during the COVID-19 Pandemic

  Taylor, A., Sundar, S. S., Bowen, R., Clayton, R., Coleridge, S., Fotopoulou, C., Ghaem-Maghami, S., Ledermann, J., Manchanda, R., Maxwell, H., Michael, A., Miles, T., Nicum, S., Nordin, A., Ramsay, B., Rundle, S., Williams, S., Wood, N. J., Yiannakis, D. & Morrison, J., 1 Mar 2022, In: Obstetrical and Gynecological Survey. 77, 3, p. 156-157 2 p.

  Research output: Contribution to journal › Comment/debate

• British infection association guidelines for the diagnosis and management of enteric fever in England

  Nabarro, L. E., McCann, N., Herdman, M. T., Dugan, C., Ladhani, S., Patel, D., Morris-Jones, S., Balasegaram, S., Heyderman, R. S., Brown, M., Parry, C. M. & Godbole, G., Apr 2022, In: Journal of Infection. 84, 4, p. 469-489 21 p.

  Research output: Contribution to journal › Article › peer-review

  Open Access

• Cancer risks among studies of medical diagnostic radiation exposure in early life without quantitative estimates of dose

  Little, M. P., Wakeford, R., Bouffler, S. D., Abalo, K., Hauptmann, M., Hamada, N. & Kendall, G. M., 1 Aug 2022, In: Science of the Total Environment, The. 832, 154723.

  Research output: Contribution to journal › Review article › peer-review