Research output per year
Research output per year
Research output
- 1 - 50 out of 185 results
Search results
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2025
Adapting the Flexible Farrington Algorithm for daily situational awareness and alert system to support public health decision-making during the SARS-CoV-2 epidemic in England
Simms, I., Charlett, A., Colón-González, F. J., Blomquist, P. B., Lake, I. R., Zaidi, A., Shadwell, S., Sedgwick, J., Paranthaman, K. & Vivancos, R., 6 Feb 2025, In: Epidemiology and Infection. 153, e28.Research output: Contribution to journal › Article › peer-review
Open Access -
An outbreak of Shiga Toxin-producing Escherichia coli Serotype O145:H28 Associated with Domestic Travel and Consumption of Unpasteurized Cheese, UK, 2023
Quinn, O. I., Jenkins, C., Greig, D. R., Neale, S., Jorgensen, F., Yanshi, Inns, T., Allison, L., Browning, L., Douglas, A. & Balasegram, S., 24 Mar 2025, In: Journal of Food Protection. 88, 4, 100470.Research output: Contribution to journal › Article › peer-review
Open Access -
A systematic review to identify research gaps in studies modeling MenB vaccinations against Neisseria infections
Metelmann, S., Thompson, A., Donten, A., Oke, S., Sun, S., Borrow, R., Xu, F., Vivancos, R., Decraene, V., Pellis, L. & Hall, I., Jan 2025, In: PLoS ONE. 20, 1, e0316184.Research output: Contribution to journal › Article › peer-review
Open Access -
Enhancing infectious intestinal disease diagnosis through metagenomic and metatranscriptomic sequencing of 1000 human diarrhoeal samples
on behalf of the INTEGRATE consortium, Dec 2025, In: Genome Medicine. 17, 1, 55.Research output: Contribution to journal › Article › peer-review
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Increasing incidence of invasive group A streptococcal (iGAS) outbreaks in England 2015-2019
Smith, I., Marchant, E., Coelho, J., Bardsley, M., Wright, A., Love, N., Balasegaram, S., Brown, C. S., Todkill, D., Lamagni, T. & Decraene, V., 12 Mar 2025, In: Epidemiology and Infection. 153, e70.Research output: Contribution to journal › Article › peer-review
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Localised wastewater SARS-CoV-2 levels linked to COVID-19 cases: A long-term multisite study in England
Jones, N. R., Elson, R., Wade, M. J., McIntyre-Nolan, S., Woods, A., Lewis, J., Hatziioanou, D., Vivancos, R., Hunter, P. R. & Lake, I. R., 25 Jan 2025, In: Science of the Total Environment, The. 962, 178455.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
Retrospective case-case study investigation of a significant increase in Cryptosporidium spp. in England and Wales, August to September 2023
Williams, S. V., Matthews, E., Inns, T., Roberts, C., Matizanadzo, J., Cleary, P., Elson, R., Williams, C. J., Jarratt, R., Chalmers, R. M. & Vivancos, R., 6 Mar 2025, In: Eurosurveillance. 30, 9, 2500155.Research output: Contribution to journal › Article › peer-review
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Seroprevalence of Borrelia burgdorferi sensu lato antibodies in English adult blood donors: A nationwide cross-sectional study, 2021–2022
Hart, E., Tulloch, J., Bailey, D., Brooks, T., Harvala, H., Simmonds, P., Vivancos, R., French, N. & Semper, A., Jan 2025, In: Ticks and Tick-borne Diseases. 16, 1, 102439.Research output: Contribution to journal › Article › peer-review
Open Access -
Timeliness of a potential automated system for national surveillance of healthcare-associated infections in England
Quan, T. P., Eyre, D. W., Shadwell, S., West, D., Hopkins, S., Chudasama, D., Muller-Pebody, B., Hope, R. & Walker, A. S., Jul 2025, In: Journal of Hospital Infection. 161, p. 10-12 3 p.Research output: Contribution to journal › Article › peer-review
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2024
A self-controlled case series study to measure the risk of SARS-CoV-2 infection associated with attendance at sporting and cultural events: the UK Events Research Programme events
Douglas, I. J., Peh, J., Mansfield, K. E., Trelfa, A., Fowler, T., Boulter, M., Cleary, P., Smith, J. & Edmunds, W. J., 6 Mar 2024, In: BMC Medicine. 22, 1, 100.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Delayed Mucosal Antiviral Responses Despite Robust Peripheral Inflammation in Fatal COVID-19
The ISARIC4C Investigators, 15 Jul 2024, In: Journal of Infectious Diseases. 230, 1, p. e17-e29Research output: Contribution to journal › Article › peer-review
4 Citations (Scopus) -
Early Detection and Monitoring of Gastrointestinal Infections Using Syndromic Surveillance: A Systematic Review
Adedire, O., Love, N. K., Hughes, H. E., Buchan, I., Vivancos, R. & Elliot, A. J., Apr 2024, In: International Journal of Environmental Research and Public Health. 21, 4, 489.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
Emergency department attendances and inpatient admissions due to mpox infection, England, 2022
Taylor, H., Humphreys, C., Verlander, N. Q., Bhattacharya, A., Vivancos, R. & Paranthaman, K., Nov 2024, In: Sexually Transmitted Infections. 100, 7, p. 423-429 7 p.Research output: Contribution to journal › Article › peer-review
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Experiences of mpox illness and case management among cis and trans gay, bisexual and other men who have sex with men in England: a qualitative study
Witzel, T. C., Ghobrial, A., Palich, R., Charles, H., Rodger, A. J., Sabin, C., Sparrowhawk, A., Pool, E. R. M., Prochazka, M., Vivancos, R., Sinka, K., Folkard, K., Burns, F. M. & Saunders, J., Apr 2024, In: EClinicalMedicine. 70, 102522.Research output: Contribution to journal › Article › peer-review
Open Access14 Citations (Scopus) -
Inequalities in uptake of childhood vaccination in England, 2019-23: longitudinal study
Flatt, A., Vivancos, R., French, N., Quinn, S., Ashton, M., Decraene, V., Hungerford, D. & Taylor-Robinson, D., 11 Dec 2024, In: BMJ. 387, p. e079550 e079550.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
Mortality Associated with Priority Diseases in Flood-Affected Areas Using District Health Information System (DHIS2) during September-December 2022: Pakistan Experience
Nisar, N., Iqbal, Z., Sartaaj, M., Ikram, A., Javad, N., Ali, K., Anjum, J., Abbas Ranjha, M., Khan, M. A., Bettani, M. A. K., Shah, W., Tanveer, N., Cleary, P., Byers, C., Wilson, A., Salman, M. & Aldeyab, M. A., 9 May 2024, In: Disaster medicine and public health preparedness. 18, 2400077.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
National outbreak of Shiga toxin-producing Escherichia coli O145:H28 associated with pre-packed sandwiches, United Kingdom, May-June 2024
Quinn, O., Yanshi, King, G., Hoban, A., Sawyer, C., Douglas, A., Painset, A., Charlett, A., Nelson, A., Rees, C., Byers, C., Williams, C., Brown, C., Mohan, K., Brown, C., Jenkins, C., Neill, C., Leckenby, G., Larkin, L. & Allison, L. & 5 others, , 27 Dec 2024, In: Epidemiology and Infection. 152, e179.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
RT-PCR genotyping assays to identify SARS-CoV-2 variants in England in 2021: a design and retrospective evaluation study
Bray, N., Sopwith, W., Edmunds, M., Vansteenhouse, H., Feenstra, J. D. M., Jacobs, P., Rajput, K., O'Connell, A. M., Smith, M. L., Blomquist, P., Hatziioanou, D., Elson, R., Vivancos, R., Gallagher, E., Wigglesworth, M. J., Dominiczak, A., Hopkins, S. & Lake, I. R., Feb 2024, In: The Lancet Microbe. 5, 2, p. e173-e180Research output: Contribution to journal › Article › peer-review
6 Citations (Scopus) -
The effectiveness of revaccination with pneumococcal polysaccharide vaccine for preventing pneumococcal disease in older adults in England: A population-based cohort study
Doherty, K., Bonnett, L., Agbla, S. C., Beveridge, N. E. R., Decraene, V., Fleming, K. M., Hungerford, D. & French, N., 17 Sept 2024, In: Vaccine. 42, 22, 126002.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
UK mosquitoes are competent to transmit Usutu virus at native temperatures
Pilgrim, J., Metelmann, S., Widlake, E., Seechurn, N., Vaux, A., Mansfield, K. L., Tanianis-Hughes, J., Sherlock, K., Johnson, N., Medlock, J., Baylis, M. & Blagrove, M. S. C., Dec 2024, In: One Health. 19, 100916.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
2023
Animal and environmental risk factors for sporadic Shiga toxin-producing Escherichia coli (STEC) infection in England: a case control study for O157, O26 and other STEC serotypes
Kintz, E., Brainard, J., Vanderes, M., Vivancos, R., Byrne, L., Butt, S., Jenkins, C., Elson, R., Lake, I. & Hunter, P., 2023, In: Pathogens and Global Health. 117, 7, p. 655-663 9 p.Research output: Contribution to journal › Article › peer-review
5 Citations (Scopus) -
An outbreak of hepatitis A virus infection in a secondary school in England with no undetected asymptomatic transmission among students
Wensley, A., Smout, E., Ngui, S. L., Balogun, K., Blomquist, P., Edelstein, M., Greenwood, R., Coles, S., Ingold, K., Sargeant, L., Gent, M., Padfield, S. & Hughes, G. J., 11 Dec 2023, In: Epidemiology and Infection. 151, e6.Research output: Contribution to journal › Article › peer-review
Open AccessFile6 Citations (Scopus)141 Downloads (Pure) -
Application of a new multi-locus variable number tandem repeat analysis (MLVA) scheme for the seasonal investigation of Cryptosporidium parvum cases in Wales and the northwest of England, spring 2022
Risby, H., Robinson, G., Chandra, N., King, G., Vivancos, R., Smith, R., Thomas, D., Fox, A., McCarthy, N. & Chalmers, R. M., Jan 2023, In: Current Research in Parasitology and Vector-Borne Diseases. 4, 100151.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
Comparison of statistical approaches to predicting norovirus laboratory reports before and during COVID-19: insights to inform public health surveillance
Ondrikova, N., Clough, H., Douglas, A., Vivancos, R., Itturiza-Gomara, M., Cunliffe, N. & Harris, J. P., Dec 2023, In: Scientific Reports. 13, 1, 21457.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Did anonymity in self-administered questionnaires improve disclosure of sensitive information during the 2022 mpox outbreak in England? An observational study
Bray, N., Blomquist, P., Hardstaff, J., Jarvis, C., Melchin, D., Turner, C., Graham, A., Balasegaram, S. & Vivancos, R., 1 Nov 2023, In: The Lancet. 402, p. S29Research output: Contribution to journal › Article › peer-review
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Environmental sampling for SARS-CoV-2 in long term care facilities: lessons from a pilot study
Kwiatkowska, R., Yaxley, N., Moore, G., Bennett, A., Donati, M., Love, N., Vivancos, R., Hickman, M. & Ready, D. R., 2023, In: Wellcome Open Research. 6, 235.Research output: Contribution to journal › Article › peer-review
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Estimated incubation period distributions of mpox using cases from two international European festivals and outbreaks in a club in Berlin, May to June 2022
McFarland, S. E., Marcus, U., Hemmers, L., Miura, F., Martínez, J. I., Martínez, F. M., Montalbán, E. G., Chazelle, E., Mailles, A., Silue, Y., Hammami, N., Lecompte, A., Ledent, N., Berghe, W. V., Liesenborghs, L., Van den Bossche, D., Cleary, P. R., Wallinga, J., Robinson, E. P. & Johansen, T. B. & 8 others, , 6 Jul 2023, In: Eurosurveillance. 28, 27Research output: Contribution to journal › Article › peer-review
Open Access14 Citations (Scopus) -
Influence of SARS-CoV-2 surveillance outputs produced by the UK health security agency (UKHSA) outbreak surveillance team on decision-making by local stakeholders
Willgert, K., Hardstaff, J., Shadwell, S., Bhattacharya, A., Blomquist, P., Vivancos, R. & Simms, I., Dec 2023, In: BMC Public Health. 23, 1, 926.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Predicting Norovirus in England Using Existing and Emerging Syndromic Data: Infodemiology Study
Ondrikova, N., Harris, J. P., Douglas, A., Hughes, H. E., Iturriza-Gomara, M., Vivancos, R., Elliot, A. J., Cunliffe, N. A. & Clough, H. E., 2023, In: Journal of Medical Internet Research. 25, e37540.Research output: Contribution to journal › Article › peer-review
Open Access7 Citations (Scopus) -
Preliminary investigation of a significant national Cryptosporidium exceedance in the United Kingdom, August 2023 and ongoing
Peake, L., Inns, T., Jarvis, C., King, G., Rabie, H., Henderson, J., Wensley, A., Jarratt, R., Roberts, C., Williams, C., Orife, O., Browning, L., Neilson, M., McCarthy, C., Millar, P., Love, N., Elwin, K., Robinson, G., Mannes, T. & Young, N. & 3 others, , 26 Oct 2023, In: Eurosurveillance. 28, 43, 2300538.Research output: Contribution to journal › Article › peer-review
Open Access9 Citations (Scopus) -
The effectiveness of primary series CoronaVac vaccine in preventing COVID-19 illness: A prospective cohort study among healthcare workers in Azerbaijan, May–November 2021
Katz, M. A., Rojas Castro, M. Y., Seyidov, N., Herdman, M. T., Mehdiyev, S., McKnight, C. J., Guseinova, A., Cojocaru, R., Doran, J., Mühlemann, B., Drosten, C., Suleymanova, J., Pebody, R., Kissling, E. & Hagverdiyev, G., Oct 2023, In: Influenza and other Respiratory Viruses. 17, 10, e13147.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
The P323L substitution in the SARS-CoV-2 polymerase (NSP12) confers a selective advantage during infection
ISARIC4C Investigators, Dec 2023, In: Genome Biology. 24, 1, 47.Research output: Contribution to journal › Article › peer-review
21 Citations (Scopus) -
2022
Can cases and outbreaks of norovirus in children provide an early warning of seasonal norovirus infection: an analysis of nine seasons of surveillance data in England UK
Donaldson, A. L., Harris, J. P., Vivancos, R. & O’Brien, S. J., 20 Jul 2022, In: BMC Public Health. 22, 1, 1393.Research output: Contribution to journal › Article › peer-review
Open AccessFile6 Citations (Scopus)35 Downloads (Pure) -
Cluster detection with random neighbourhood covering: Application to invasive Group A Streptococcal disease
Cavallaro, M., Coelho, J., Ready, D., Decraene, V., Lamagni, T., McCarthy, N. D., Todkill, D. & Keeling, M. J., Nov 2022, In: PLoS Computational Biology. 18, 11, e1010726.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Community transmission of monkeypox in the United Kingdom, April to May 2022
UKHSA Monkeypox Incident Management team, Vivancos, R., Anderson, C., Blomquist, P., Balasegaram, S., Bell, A., Bishop, L., Brown, C. S., Chow, Y., Edeghere, O., Florence, I., Logan, S., Manley, P., Crowe, W., McAuley, A., Shankar, A. G., Mora-Peris, B., Paranthaman, K., Prochazka, M. & Ryan, C. & 12 others, , 2 Jun 2022, In: Eurosurveillance. 27, 2Research output: Contribution to journal › Article › peer-review
Open AccessFile288 Citations (Scopus)81 Downloads (Pure) -
Cross-sectional household transmission study of Cryptosporidium shows that C. hominis infections are a key risk factor for spread
McKerr, C., Chalmers, R. M., Elwin, K., Ayres, H., Vivancos, R., O’Brien, S. J. & Christley, R. M., 2 Feb 2022, (E-pub ahead of print) In: BMC Infectious Diseases. 22, 1, 114.Research output: Contribution to journal › Article › peer-review
Open AccessFile9 Citations (Scopus)7 Downloads (Pure) -
Daily use of lateral flow devices by contacts of confirmed COVID-19 cases to enable exemption from isolation compared with standard self-isolation to reduce onward transmission of SARS-CoV-2 in England: a randomised, controlled, non-inferiority trial
Love, N. K., Ready, D. R., Turner, C., Verlander, N. Q., French, C. E., Martin, A. F., Sorensen, T. B., Metelmann, S., Denford, S., Rubin, G. J., Yardley, L., Amlôt, R., Hopkins, S. & Oliver, I., 10 Oct 2022, In: The Lancet Respiratory Medicine. 10, 11, p. 1074-1085 12 p.Research output: Contribution to journal › Article › peer-review
Open Access15 Citations (Scopus) -
Determining Temperature Preference of Mosquitoes and Other Ectotherms
Haziqah-Rashid, A., Stobierska, K., Glenn, L., Metelmann, S., Sherlock, K., Chrostek, E. & Blagrove, M. S. C., 28 Sept 2022, In: Journal of Visualized Experiments. 2022, 187, e64356.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Estimating the potential for global dissemination of pandemic pathogens using the global airline network and healthcare development indices
Meslé, M. M. I., Vivancos, R., Hall, I. M., Christley, R. M., Leach, S. & Read, J. M., Dec 2022, In: Scientific Reports. 12, 1, 3070.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus)6 Downloads (Pure) -
Implementation of corticosteroids in treatment of COVID-19 in the ISARIC WHO Clinical Characterisation Protocol UK: prospective, cohort study
ISARIC4C Investigators, Apr 2022, In: The Lancet Digital Health. 4, 4, p. e220-e234Research output: Contribution to journal › Article › peer-review
25 Citations (Scopus) -
Invasive Group A Streptococcus Outbreaks Associated with Home Healthcare, England, 2018–2019
Nabarro, L. E., Brown, C. S., Balasegaram, S., Decraene, V., Elston, J., Kapadia, S., Harrington, P., Hoffman, P., Mearkle, R., Patel, B., Ready, D., Robinson, E. & Lamagni, T., May 2022, In: Emerging Infectious Diseases. 28, 5, p. 915-923 9 p.Research output: Contribution to journal › Article › peer-review
Open Access8 Citations (Scopus) -
Prospective validation of the 4C prognostic models for adults hospitalised with COVID-19 using the ISARIC WHO Clinical Characterisation Protocol
ISARIC4C, 1 Jan 2022, In: Thorax. 77, 6, p. 606-615 10 p.Research output: Contribution to journal › Article › peer-review
25 Citations (Scopus) -
Providing early indication of regional anomalies in COVID-19 case counts in England using search engine queries
Yom-Tov, E., Lampos, V., Inns, T., Cox, I. J. & Edelstein, M., Dec 2022, In: Scientific Reports. 12, 1, 2373.Research output: Contribution to journal › Article › peer-review
Open Access6 Citations (Scopus) -
School Attendance Registers for the Syndromic Surveillance of Infectious Intestinal Disease in UK Children: Protocol for a Retrospective Analysis
Donaldson, A. L., Harris, J. P., Vivancos, R., Hungerford, D., Hall, I. & O'Brien, S. J., Jan 2022, In: JMIR Research Protocols. 11, 1, e30078.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
Symptom profiling for infectious intestinal disease (IID): Do symptom profiles alter with age?
Donaldson, A. L., Harris, J. P., Vivancos, R. & Brien, S. J., 30 Jun 2022, In: PLoS ONE. 17, 6, e0269676.Research output: Contribution to journal › Article › peer-review
Open AccessFile1 Citation (Scopus)12 Downloads (Pure) -
The contribution of hospital-acquired infections to the COVID-19 epidemic in England in the first half of 2020
ISARIC4C Investigators, CMMID COVID-19 Working Group, Knight, G. M., Pham, T. M., Stimson, J., Funk, S., Jafari, Y., Pople, D., Evans, S., Yin, M., Brown, C. S., Bhattacharya, A., Hope, R., Semple, M. G., Robotham, J. V., Read, J. M. & Cooper, B. S., 18 Jun 2022, In: BMC Infectious Diseases. 22, 1, 556.Research output: Contribution to journal › Article › peer-review
Open AccessFile30 Citations (Scopus)31 Downloads (Pure) -
Transmission dynamics of COVID-19 in household and community settings in the United Kingdom, January to March 2020
Lopez Bernal, J., Panagiotopoulos, N., Byers, C., Garcia Vilaplana, T., Boddington, N., Zhang, X. S., Charlett, A., Elgohari, S., Coughlan, L., Whillock, R., Logan, S., Bolt, H., Sinnathamby, M., Letley, L., MacDonald, P., Vivancos, R., Edeghere, O., Anderson, C., Paranthaman, K. & Cottrell, S. & 5 others, , 14 Apr 2022, In: Eurosurveillance. 27, 15Research output: Contribution to journal › Article › peer-review
Open AccessFile19 Citations (Scopus)114 Downloads (Pure) -
2021
Case fatality risk of the SARS-CoV-2 variant of concern B.1.1.7 in England, 16 November to 5 February
Grint, D. J., Wing, K., Williamson, E., McDonald, H. I., Bhaskaran, K., Evans, D., Evans, S. J. W., Walker, A. J., Hickman, G., Nightingale, E., Schultze, A., Rentsch, C. T., Bates, C., Cockburn, J., Curtis, H. J., Morton, C. E., Bacon, S., Davy, S., Wong, A. Y. S. & Mehrkar, A. & 16 others, , 18 Mar 2021, In: Eurosurveillance. 26, 11, 2100256.Research output: Contribution to journal › Article › peer-review
Open AccessFile142 Citations (Scopus)10 Downloads (Pure) -
Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity
The ISARIC4C Investigators & The COVID-19 Genomics UK (COG-UK) consortium, 4 Mar 2021, In: Cell. 184, 5, p. 1171-1187.e20Research output: Contribution to journal › Article › peer-review
439 Citations (Scopus) -
COVID-19 testing in outbreak-free care homes: what are the public health benefits?
Green, R., Tulloch, J. S. P., Tunnah, C., Coffey, E., Lawrenson, K., Fox, A., Mason, J., Barnett, R., Constantine, A., Shepherd, W., Ashton, M., Beadsworth, M. B. J., Vivancos, R., Hall, I., Walker, N. & Ghebrehewet, S., May 2021, In: Journal of Hospital Infection. 111, p. 89-95 7 p.Research output: Contribution to journal › Article › peer-review
16 Citations (Scopus)