Research output per year
Research output per year
Research output
- 1 - 50 out of 307 results
Search results
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2025
Adapting COVID-19 research infrastructure to capture influenza and respiratory syncytial virus alongside SARS-CoV-2 in UK healthcare workers winter 2022/23: Results of a pilot study in the SIREN cohort
SIREN Study Group, May 2025, In: PLoS ONE. 20, 5 May, e0316131.Research output: Contribution to journal › Article › peer-review
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A qualitative study exploring the barriers and facilitators of conducting the SARS-CoV2 Immunity & Reinfection Evaluation (SIREN) study during the COVID-19 pandemic: Implications for developing resilient NHS research structures
Kamal, A., Haywood, J., Sparkes, D., Howells, A., Russell, S., Hopkins, S., Islam, J. & Hall, V., Sept 2025, In: Public Health. 246, 105818.Research output: Contribution to journal › Article › peer-review
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Case series of the first five human infections with monkeypox virus clade Ib and report on the public health response, United Kingdom, October to November 2024
Alvi, M. I., Kliner, M., Welfare, W., Gordon, N. C., Thomas, S., Padfield, S., Emmett, H. E., Heinsbroek, E., Hughes, G. J., Groves, N., Gallagher, E., Pullan, S., Belfield, A., Houlihan, C. F., Rampling, T., O'Hara, G., Tunbridge, A., Dunning, J., Whittaker, E. & Alonso, A. & 5 others, , 13 Mar 2025, In: Eurosurveillance. 30, 10, 2500131.Research output: Contribution to journal › Article › peer-review
Open Access -
Characterisation of the SARS-CoV-2 pandemic in healthcare workers within the United Kingdom: Risk factors for infection during four successive waves
SIREN Study Group, Feb 2025, In: Journal of Infection. 90, 2, 106393.Research output: Contribution to journal › Article › peer-review
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Cholera due to exposure in Europe associated with consumption of holy water from Ethiopia, January to February 2025
Frank, C., Jenkins, C., Weis, J. M., Brilmayer, A., Schoeps, A., Dupke, S., Wilking, H., Katwa, P., Nair, S., Barker, C., Ready, D., Godbole, G., Hopkins, S. & Kirkbride, H., 2025, In: Eurosurveillance. 30, 14, p. 1-4 4 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Cohort retention in a pandemic response study: lessons from the SARS-CoV2 Immunity & Reinfection Evaluation (SIREN) study
Howells, A., Munro, K., Foulkes, S., Kamal, A., Haywood, J., Russell, S., Sparkes, D., Aquino, E., Evans, J., Weston, D., Hopkins, S., Islam, J. & Hall, V., Jan 2025, In: BMC Medical Research Methodology. 25, 1, p. 27 27.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
Comparative evaluation of swabbing sites for Omicron variant detection in PCR testing
Fowler, T., Blandford, E., Chapman, D., Futschik, M. E., Kulasegaran-Shylini, R., Tunkel, S., Lewis, C., Fellows, A., Sheppard, E., McCabe, L., Marks, P., Klapper, P. E., Dodgson, A., Sudhanva, M., Kidd, M., Vail, A., Hopkins, S. & Peto, T., Jan 2025, In: Diagnostic Microbiology and Infectious Disease. 111, 1, p. 116577 116577.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
Estimating neutralising antibody responses against emerging SARS-CoV-2 variants utilising convalescent sera before the roll-out of XBB-lineage vaccines
Atti, A., England, A., Sung, J., Foulkes, S., Islam, J., Otter, A., Thomas, K., Hallis, B., Hopkins, S., Charlton, S. & Hall, V., 2 Apr 2025, In: Vaccine. 51, 126898.Research output: Contribution to journal › Article › peer-review
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Incorrect interpretation of the role of COVID-19 vaccination boosters in saving lives – Authors' reply
Meslé, M. M. I., Brown, J., Widdowson, M. A. & Pebody, R. G., Jan 2025, In: The Lancet Respiratory Medicine. 13, 1, p. e5Research output: Contribution to journal › Letter › peer-review
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Key SARS-CoV-2 testing strategies implemented in the UK: rationale and impact
Fowler, T., Kenny, C., Tunkel, S., Dodgson, A., Hall, J., Marks, P., Klapper, P., Sudhanva, M., Kulasegaran-Shylini, R., Thorlu-Bangura, Z., Edeghere, O., Falconer, C., Jenkins, R., Blandford, E., Hall, I., Buchan, I., Edmunds, W. J., Peto, T. & Hopkins, S., 28 Feb 2025, In: Journal of the Royal Society of Medicine. 118, 4, p. 112-120 9 p.Research output: Contribution to journal › Comment/debate
1 Citation (Scopus) -
Multiplex lateral flow test sensitivity and specificity in detecting influenza A, B and SARS-CoV-2 in adult patients in a UK emergency department
Batra, R., Blandford, E., Kulasegaran-Shylini, R., Futschik, M. E., Bown, A., Catton, M., Conti-Frith, H., Alexandridou, A., Gill, R., Milroy, C., Harper, S., Gettings, H., Noronha, M., Harrison, H. L., Douthwaite, S., Nebbia, G., Klapper, P. E., Tunkel, S., Vipond, R. & Hopkins, S. & 1 others, , 21 Jan 2025, In: Emergency Medicine Journal. 42, 2, p. 98-104 7 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Possible scenarios for the spread of mpox outside the endemic focus in Africa
Petersen, E., Hvid, U., Tomori, O., Pedersen, A. G., Wallinga, J., Pebody, R., Cenciarelli, O., Aavitsland, P., Van Laeken, D., Andreasen, V., Schneider, U., Simonsen, J. K., Goedknegt, M. J. F., Johannesen, C. K., Lundgren, J. D., Koch, A., Søborg, B., Ekström, A. M., Nohynek, H. & Aarestrup, F. M. & 2 others, , Apr 2025, In: International Journal of Infectious Diseases. 153, 107373.Research output: Contribution to journal › Short survey › peer-review
2 Citations (Scopus) -
Survey of healthcare-associated sink infrastructure, and sink trap antibiotic residues and biochemistry, in twenty-nine UK hospitals
The SinkBug Consortium, May 2025, In: Journal of Hospital Infection. 159, p. 140-147 8 p.Research output: Contribution to journal › Article › peer-review
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The importance of monitoring a new antibiotic: ceftazidime/avibactam usage and resistance experience from England, 2016 to 2020
Guy, R. L., Hopkins, K. L., Budd, E. L., Wilson, K., Fountain, H., Meunier, D., Pike, R., Gerver, S. M., Gnanadurai, R., Brown, C. S., Hopkins, S. & Muller-Pebody, B., Apr 2025, In: Eurosurveillance. 30, 14, p. 2 1 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Timeliness of a potential automated system for national surveillance of healthcare-associated infections in England
Quan, T. P., Eyre, D. W., Shadwell, S., West, D., Hopkins, S., Chudasama, D., Muller-Pebody, B., Hope, R. & Walker, A. S., Jul 2025, In: Journal of Hospital Infection. 161, p. 10-12 3 p.Research output: Contribution to journal › Article › peer-review
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Understanding occupational and attitudinal factors influencing UK healthcare worker decisions for COVID-19 and influenza vaccination: A cross-sectional survey within SIREN
Bustamante, Q., Sparkes, D., Findlater, L., Munro, K., Lut, I., Khawam, J., Russell, S., Atti, A., Foulkes, S., Hopkins, S., Hall, V. & Islam, J., 22 May 2025, In: Vaccine. 56, 127160.Research output: Contribution to journal › Article › peer-review
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2024
Adapting COVID-19 research infrastructure to capture influenza and respiratory syncytial virus alongside SARS-CoV-2 in UK healthcare workers winter 2022/23 and beyond: protocol for a pragmatic sub-study
SIREN study team, 2024, In: NIHR Open Research. 4, 1.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
Adapting COVID-19 research infrastructure to capture influenza and RSV alongside SARS-CoV-2 in UK healthcare workers winter 2022/23: Evaluation of the SIREN Winter Pressures pilot study
Russell, S., Munro, K., Foulkes, S., Broad, J., Sparkes, D., Atti, A., Islam, J., Hopkins, S., Hall, V. & group, S. S., 9 Sept 2024Research output: Other contribution › peer-review
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An outbreak of Shiga toxin-producing Escherichia coli (STEC) O157:H7 associated with contaminated lettuce and the cascading risks from climate change, the United Kingdom, August to September 2022
Cunningham, N., Jenkins, C., Williams, S., Garner, J., Eggen, B., Douglas, A., Potter, T., Wilson, A., Leonardi, G., Larkin, L. & Hopkins, S., 5 Sept 2024, In: Eurosurveillance. 29, 36, 2400161.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
A retrospective propensity-score-matched cohort study of the impact of procalcitonin testing on antibiotic use in hospitalized patients during the first wave of COVID-19
behalf of the PEACH Study Group, 1 Nov 2024, In: Journal of Antimicrobial Chemotherapy. 79, 11, p. 2792-2800 9 p.Research output: Contribution to journal › Article › peer-review
Open Access -
A workflow for the detection of antibiotic residues, measurement of water chemistry and preservation of hospital sink drain samples for metagenomic sequencing
Rodger, G., Chau, K., Aranega-Bou, P., Roohi, A., Moore, G., Hopkins, K. L., Hopkins, S., Walker, A. S. & Stoesser, N., Feb 2024, In: Journal of Hospital Infection. 144, p. 128-136 9 p.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
Comparing indicators of disease severity among patients presenting to hospital for urinary tract infections before and during the COVID-19 pandemic
Patel, S., Gill, M., Hayward, A., Hopkins, S., Copas, A. & Shallcross, L., 1 Apr 2024, In: JAC-Antimicrobial Resistance. 6, 2, dlae067.Research output: Contribution to journal › Article › peer-review
Open Access -
Correction to: The plasmidome associated with Gram-negative bloodstream infections: A large-scale observational study using complete plasmid assemblies (Nature Communications, (2024), 15, 1, (1612), 10.1038/s41467-024-45761-7)
Lipworth, S., Matlock, W., Shaw, L., Vihta, K. D., Rodger, G., Chau, K., Barker, L., George, S., Kavanagh, J., Davies, T., Vaughan, A., Andersson, M., Jeffery, K., Oakley, S., Morgan, M., Hopkins, S., Peto, T., Crook, D., Walker, A. S. & Stoesser, N., Dec 2024, In: Nature Communications. 15, 1, 3060.Research output: Contribution to journal › Comment/debate
Open Access2 Citations (Scopus) -
COVID-19 testing and reporting behaviours in England across different sociodemographic groups: a population-based study using testing data and data from community prevalence surveillance surveys
Bajaj, S., Chen, S., Creswell, R., Naidoo, R., Tsui, J. L. H., Kolade, O., Nicholson, G., Lehmann, B., Hay, J. A., Kraemer, M. U. G., Aguas, R., Donnelly, C. A., Fowler, T., Hopkins, S., Cantrell, L., Dahal, P., White, L. J., Stepniewska, K., Voysey, M. & Lambert, B. & 28 others, , Nov 2024, In: The Lancet Digital Health. 6, 11, p. e778-e790Research output: Contribution to journal › Article › peer-review
6 Citations (Scopus) -
COVID-19 vaccines are effective at preventing symptomatic and severe infection among healthcare workers: A clinical review
Galgut, O., Ashford, F., Deeks, A., Ghataure, A., Islam, M., Sambhi, T., Ker, Y. W., Duncan, C. J. A., de Silva, T. I., Hopkins, S., Hall, V., Klenerman, P., Dunachie, S. & Richter, A., Oct 2024, In: Vaccine: X. 20, 100546.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Detecting changes in population trends in infection surveillance using community SARS-CoV-2 prevalence as an exemplar
COVID-19 Infection Survey Team, 1 Dec 2024, In: American Journal of Epidemiology. 193, 12, p. 1848-1860 13 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Detection of SARS-CoV-2 BA.2.86 by lateral flow devices
Bown, A., Sweed, A., Catton, M., Nelthorpe-Cowne, J., Conti-Frith, H., Elderfield, R., Terrey, J., Abib, H., Lui, C., Fisher, E., Bewley, K. R., Coombes, N. S., Robinson, D., Agrawal, S., Hallis, B., Blandford, E., Fowler, T., Williamson, D. A. & Vipond, R., Feb 2024, In: International Journal of Infectious Diseases. 139, p. 168-170 3 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Double testing with lateral flow antigen test devices for COVID-19: does a second test in quick succession add value?
Futschik, M. E., Tunkel, S. A., Turek, E., Chapman, D., Thorlu-Bangura, Z., Kulasegaran-Shylini, R., Blandford, E., Dodgson, A., Klapper, P. E., Sudhanva, M., Crook, D., Bell, J., Hopkins, S., Peto, T. & Fowler, T., Sept 2024, In: Journal of Virological Methods. 329, 115000.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
Effectiveness of BNT162b2 mRNA vaccine third doses and previous infection in protecting against SARS-CoV-2 infections during the Delta and Omicron variant waves; the UK SIREN cohort study September 2021 to February 2022
the SIREN Study Group, Jan 2024, In: Journal of Infection. 88, 1, p. 30-40 11 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Citations (Scopus) -
Effect of second booster vaccinations and prior infection against SARS-CoV-2 in the UK SIREN healthcare worker cohort
SIREN Study Group, Jan 2024, In: The Lancet Regional Health - Europe. 36, 100809.Research output: Contribution to journal › Article › peer-review
13 Citations (Scopus) -
Estimating the household secondary attack rate and serial interval of COVID-19 using social media
Virus Watch Consortium, Dec 2024, In: npj Digital Medicine. 7, 1, 194.Research output: Contribution to journal › Article › peer-review
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How, why and when are delayed (back-up) antibiotic prescriptions used in primary care? A realist review integrating concepts of uncertainty in healthcare
on behalf of the STEP-UP study team, Dec 2024, In: BMC Public Health. 24, 1, 2820.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Immunomodulatory therapy in children with paediatric inflammatory multisystem syndrome temporally associated with SARS-CoV-2 (PIMS-TS, MIS-C; RECOVERY): a randomised, controlled, open-label, platform trial
RECOVERY Collaborative Group, 2024, (Accepted/In press) In: The Lancet Child and Adolescent Health.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Implications of suboptimal measles immunity in UK health-care workers
Ho, A., Galgut, O., Faustini, S., Peters, N., Shields, A., Klenerman, P., Hopkins, S., Hall, V., Dunachie, S. & Richter, A., 6 Jul 2024, In: The Lancet. 404, 10447, p. 23-24 2 p.Research output: Contribution to journal › Letter › peer-review
1 Citation (Scopus) -
Influenza in travellers
Pebody, R., Dabrera, G. & Ellis, J., 23 May 2024, Emerging and Re-emerging Infections in Travellers. Springer International Publishing, p. 301-309 9 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Overcoming challenges in the economic evaluation of interventions to optimise antibiotic use
on behalf of the STEPUP team, Dec 2024, In: Communications Medicine. 4, 1, 101.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
Persistent elevation in incidence of pneumonia in children in England, 2023/24
Todkill, D., Lamagni, T., Pebody, R., Ramsay, M., Woolham, D., Demirjian, A., Salzmann, A., Chand, M., Hughes, H. E., Bennett, C., Hope, R., Watson, C. H., Brown, C. S. & Elliot, A. J., 1 Aug 2024, In: Eurosurveillance. 29, 32, pii=2400485.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Predicting future hospital antimicrobial resistance prevalence using machine learning
Vihta, K. D., Pritchard, E., Pouwels, K. B., Hopkins, S., Guy, R. L., Henderson, K., Chudasama, D., Hope, R., Muller-Pebody, B., Walker, A. S., Clifton, D. & Eyre, D. W., Dec 2024, In: Communications Medicine. 4, 1, 197.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Prevalence and impact of persistent symptoms following SARS-CoV-2 infection among healthcare workers: A cross-sectional survey in the SIREN cohort
SIREN Study Group, Oct 2024, In: Journal of Infection. 89, 4, 106259.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
Protection of vaccine boosters and prior infection against mild/asymptomatic and moderate COVID-19 infection in the UK SIREN healthcare worker cohort: October 2023 to March 2024
SIREN Study Group, Nov 2024, In: Journal of Infection. 89, 5, 106293.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
Rapid antigen testing for SARS-CoV-2 by lateral flow assay: A field evaluation of self- and professional testing at UK community testing sites
Futschik, M. E., Johnson, S., Turek, E., Chapman, D., Carr, S., Thorlu-Bangura, Z., Klapper, P. E., Sudhanva, M., Dodgson, A., Cole-Hamilton, J. R., Germanacos, N., Kulasegaran-Shylini, R., Blandford, E., Tunkel, S., Peto, T., Hopkins, S. & Fowler, T., Apr 2024, In: Journal of Clinical Virology. 171, 105654.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
Rapid systematic review on risks and outcomes of sepsis: the influence of risk factors associated with health inequalities
Bladon, S., Ashiru-Oredope, D., Cunningham, N., Pate, A., Martin, G. P., Zhong, X., Gilham, E. L., Brown, C. S., Mirfenderesky, M., Palin, V. & van Staa, T. P., Jan 2024, In: International Journal for Equity in Health. 23, 1, 34.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
RT-PCR genotyping assays to identify SARS-CoV-2 variants in England in 2021: a design and retrospective evaluation study
Bray, N., Sopwith, W., Edmunds, M., Vansteenhouse, H., Feenstra, J. D. M., Jacobs, P., Rajput, K., O'Connell, A. M., Smith, M. L., Blomquist, P., Hatziioanou, D., Elson, R., Vivancos, R., Gallagher, E., Wigglesworth, M. J., Dominiczak, A., Hopkins, S. & Lake, I. R., Feb 2024, In: The Lancet Microbe. 5, 2, p. e173-e180Research output: Contribution to journal › Article › peer-review
6 Citations (Scopus) -
Self-swabbing versus assisted swabbing for viral detection by qRT-PCR: the experience from SARS-CoV-2 based on a meta-analysis of six prospectively designed evaluations conducted in a UK setting
Fowler, T., Chapman, D., Futschik, M. E., Tunkel, S. A., Blandford, E., Turek, E., Kolade, O., da Cunha, S. S., Dodgson, A., Klapper, P., Sudhanva, M., Davies, L., Hill, S., Hopkins, S. & Peto, T., 10 Jun 2024, In: European Journal of Clinical Microbiology and Infectious Diseases. 43, 8, p. 1621-1630 10 p.Research output: Contribution to journal › Article › peer-review
Open Access2 Citations (Scopus) -
Sepsis and case fatality rates and associations with deprivation, ethnicity, and clinical characteristics: population-based case–control study with linked primary care and hospital data in England
van Staa, T. P., Pate, A., Martin, G. P., Sharma, A., Dark, P., Felton, T., Zhong, X., Bladon, S., Cunningham, N., Gilham, E. L., Brown, C. S., Mirfenderesky, M., Palin, V. & Ashiru-Oredope, D., Aug 2024, In: Infection. 52, 4, p. 1469-1479 11 p.Research output: Contribution to journal › Article › peer-review
Open Access3 Citations (Scopus) -
The Challenges and Lessons Learned Building a New UK Infrastructure for Finding and Accessing Population-Wide COVID-19 Data for Research and Public Health Analysis: The CO-CONNECT Project
Jefferson, E., Milligan, G., Johnston, J., Mumtaz, S., Cole, C., Best, J., Giles, T. C., Cox, S., Masood, E., Horban, S., Urwin, E., Beggs, J., Chuter, A., Reilly, G., Morris, A., Seymour, D., Hopkins, S., Sheikh, A. & Quinlan, P., 2024, In: Journal of Medical Internet Research. 26, 1, e50235.Research output: Contribution to journal › Review article › peer-review
Open Access2 Citations (Scopus) -
The cost-effectiveness of procalcitonin for guiding antibiotic prescribing in individuals hospitalized with COVID-19: part of the PEACH study
PEACH Study Group, 1 Aug 2024, In: Journal of Antimicrobial Chemotherapy. 79, 8, p. 1831-1842 12 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
The effectiveness and efficiency of asymptomatic SARS-CoV-2 testing strategies for patient and healthcare workers within acute NHS hospitals during an omicron-like period
Evans, S., Naylor, N. R., Fowler, T., Hopkins, S. & Robotham, J., 8 Jan 2024, In: BMC Infectious Diseases. 24, 1, 64.Research output: Contribution to journal › Article › peer-review
Open Access4 Citations (Scopus) -
The plasmidome associated with Gram-negative bloodstream infections: A large-scale observational study using complete plasmid assemblies
Lipworth, S., Matlock, W., Shaw, L., Vihta, K. D., Rodger, G., Chau, K., Barker, L., George, S., Kavanagh, J., Davies, T., Vaughan, A., Andersson, M., Jeffery, K., Oakley, S., Morgan, M., Hopkins, S., Peto, T., Crook, D., Walker, A. S. & Stoesser, N., Dec 2024, In: Nature Communications. 15, 1, 1612.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
Understanding excess mortality in Europe during the COVID-19 pandemic
Vestergaard, L. S. & Pebody, R. G., Oct 2024, In: The Lancet Regional Health - Europe. 45, 101053.Research output: Contribution to journal › Comment/debate
Open Access