Research output per year
Research output per year
Research output
- 1 - 50 out of 56 results
Search results
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2024
Identification of 2 Novel Subtypes of Hepatitis C Virus Genotype 8 and a Potential New Genotype Successfully Treated with Direct Acting Antivirals
Mbisa, J. L., Lapp, Z., Bibby, D. F., Phillips, L. T., Manso, C. F., Packer, S., Simmons, R., Harris, K., Mohan, J., Chinnappan, L., Leitner, T. & Bradshaw, D., 15 Dec 2024, In: Journal of Infectious Diseases. 230, 6, p. e1254-e1262Research output: Contribution to journal › Article › peer-review
4 Citations (Scopus) -
Molecular detection of ceftriaxone resistance in Neisseria gonorrhoeae clinical specimens: a tool for public health control
Day, M. J., Boampong, D., Pitt, R., Bari, A., Rebec, M., Saunders, J., Fifer, H., Mbisa, J. L. & Cole, M. J., 2024, In: Sexually Transmitted Infections. 100, 7, p. 454-456 3 p.Research output: Contribution to journal › Article › peer-review
1 Citation (Scopus) -
2023
Characterization of Rare Spontaneous Human Immunodeficiency Virus Viral Controllers Attending a National United Kingdom Clinical Service Using a Combination of Serology and Molecular Diagnostic Assays
Khan, M., Bradshaw, D., Brown, C. S., Haddow, J., Patel, P., Tosswill, J. H. C., Pollock, K., Elliott, T., Wang, X., Alagaratnam, J., Mora-Peris, B., Kaye, S., McClure, M. O., Muir, D., Randell, P., Taylor, G. P. & Fidler, S. J., 1 May 2023, In: Open Forum Infectious Diseases. 10, 5, ofad108.Research output: Contribution to journal › Article › peer-review
Open Access1 Citation (Scopus) -
HTLV seroprevalence in people using HIV pre-exposure prophylaxis in England
Bradshaw, D., Khawar, A., Patel, P., Tosswill, J., Brown, C., Ogaz, D., Mason, E., Osman, R., Mitchell, H., Dosekun, O., Peris, B. M., Pickard, G., Rayment, M., Jones, R., Hopkins, M., Williams, A., Kingston, M., Machin, N., Taha, Y. & Duncan, S. & 8 others, , Mar 2023, In: Journal of Infection. 86, 3, p. 245-247 3 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
Increased reports of severe myocarditis associated with enterovirus infection in neonates, United Kingdom, 27 June 2022 to 26 April 2023
Singanayagam, A., Moore, C., Froude, S., Celma, C., Stowe, J., Hani, E., Ng, K. F., Muir, P., Roderick, M., Cottrell, S., Bibby, D. F., Vipond, B., Gillett, S., Davis, P. J., Gibb, J., Barry, M., Harris, P., Rowley, F., Song, J. & Shankar, A. G. & 14 others, , 28 Sept 2023, In: Eurosurveillance. 28, 39, 2300313.Research output: Contribution to journal › Article › peer-review
15 Citations (Scopus) -
Investigation of hospital discharge cases and SARS-CoV-2 introduction into Lothian care homes
The COVID-19 Genomics UK (COG-UK) consortium, May 2023, In: Journal of Hospital Infection. 135, p. 28-36 9 p.Research output: Contribution to journal › Article › peer-review
2 Citations (Scopus) -
The SARS-CoV-2 Alpha variant was associated with increased clinical severity of COVID-19 in Scotland: A genomics-based retrospective cohort analysis
The COVID-19 Genomics UK (COG-UK) consortium, Apr 2023, In: PLoS ONE. 18, 4, e0284187.Research output: Contribution to journal › Article › peer-review
7 Citations (Scopus) -
2022
Clinical evaluation of a Hepatitis C Virus whole-genome sequencing pipeline for genotyping and resistance testing
STOP-HCV Consortium, 10 Mar 2022, In: Clinical Microbiology and Infection. 28, 3, p. 405-409 5 p.Research output: Contribution to journal › Article › peer-review
3 Citations (Scopus) -
COVID-19 due to the B.1.617.2 (Delta) variant compared to B.1.1.7 (Alpha) variant of SARS-CoV-2: a prospective observational cohort study
The COVID-19 Genomics U. K. (COG-UK) Consortium, Dec 2022, In: Scientific Reports. 12, 1, 10904.Research output: Contribution to journal › Article › peer-review
43 Citations (Scopus) -
Hospital admission and emergency care attendance risk for SARS-CoV-2 delta (B.1.617.2) compared with alpha (B.1.1.7) variants of concern: a cohort study
COVID-19 Genomics UK (COG-UK) Consortium, 1 Jan 2022, In: The Lancet Infectious Diseases. 22, 1, p. 35-42 8 p.Research output: Contribution to journal › Article › peer-review
568 Citations (Scopus) -
It Takes Two to Tango: Combining Conventional Culture With Molecular Diagnostics Enhances Accuracy of Streptococcus pneumoniae Detection and Pneumococcal Serogroup/Serotype Determination in Carriage
Miellet, W. R., van Veldhuizen, J., Litt, D., Mariman, R., Wijmenga-Monsuur, A. J., Badoux, P., Nieuwenhuijsen, T., Thombre, R., Mayet, S., Eletu, S., Sheppard, C., van Houten, M. A., Rots, N. Y., Miller, E., Fry, N. K., Sanders, E. A. M. & Trzciński, K., 18 Apr 2022, In: Frontiers in Microbiology. 13, 859736.Research output: Contribution to journal › Article › peer-review
Open AccessFile10 Citations (Scopus)14 Downloads (Pure) -
Prevalence of hepatitis B immunity and infection in home self-sampling HIV service users
Roche, R., Simmons, R., Logan, L., Ledesma Moreno, J., Sabin, C., Ijaz, S. & Mandal, S., 17 May 2022, In: Sexually Transmitted Infections. 98, 4, p. 286-292 7 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile8 Citations (Scopus)36 Downloads (Pure) -
Recurrent SARS-CoV-2 mutations in immunodeficient patients
The COVID-19 Genomics UK (COG-UK) consortium, 2022, In: Virus Evolution. 8, 2, veac050.Research output: Contribution to journal › Article › peer-review
63 Citations (Scopus) -
SARS-CoV-2 lineage dynamics in England from September to November 2021: high diversity of Delta sub-lineages and increased transmissibility of AY.4.2
The COVID-19 Genomics UK (COG-UK) consortium, Dec 2022, In: BMC Infectious Diseases. 22, 1, 647.Research output: Contribution to journal › Article › peer-review
12 Citations (Scopus) -
SARS-CoV-2 Omicron is an immune escape variant with an altered cell entry pathway
PITCH Consortium & The COVID-19 Genomics UK (COG-UK) consortium, 1 Aug 2022, In: Nature Microbiology. 7, 8, p. 1161-1179 19 p.Research output: Contribution to journal › Article › peer-review
423 Citations (Scopus) -
SARS-CoV-2 Testing in the Community: Testing Positive Samples with the TaqMan SARS-CoV-2 Mutation Panel To Find Variants in Real Time
The COVID-19 Genomics UK (COG-UK) consortium, Apr 2022, In: Journal of Clinical Microbiology. 60, 4Research output: Contribution to journal › Article › peer-review
9 Citations (Scopus) -
Spatial growth rate of emerging SARS-CoV-2 lineages in England, September 2020-December 2021
The COVID-19 Genomics UK (COG-UK) consortium, 20 Jul 2022, In: Epidemiology and Infection. 150, e145.Research output: Contribution to journal › Article › peer-review
8 Citations (Scopus) -
2021
Circulating SARS-CoV-2 spike N439K variants maintain fitness while evading antibody-mediated immunity
The ISARIC4C Investigators & The COVID-19 Genomics UK (COG-UK) consortium, 4 Mar 2021, In: Cell. 184, 5, p. 1171-1187.e20Research output: Contribution to journal › Article › peer-review
439 Citations (Scopus) -
Real world SOF/VEL/VOX retreatment outcomes and viral resistance analysis for HCV patients with prior failure to DAA therapy
Smith, D. A., Bradshaw, D., Mbisa, J. L., Manso, C. F., Bibby, D. F., Singer, J. B., Thomson, E. C., da Silva Filipe, A., Aranday-Cortes, E., Ansari, M. A., Brown, A., Hudson, E., Benselin, J., Healy, B., Troke, P., McLauchlan, J., Barnes, E. & Irving, W. L., Sept 2021, In: Journal of Viral Hepatitis. 28, 9, p. 1256-1264 9 p.Research output: Contribution to journal › Article › peer-review
Open AccessFile22 Citations (Scopus)22 Downloads (Pure) -
Sensitivity of SARS-CoV-2 B.1.1.7 to mRNA vaccine-elicited antibodies
The CITIID-NIHR BioResource COVID-19 Collaboration & The COVID-19 Genomics UK (COG-UK) consortium, 11 Mar 2021, In: Nature. 593, 7857, p. 136-141Research output: Contribution to journal › Article › peer-review
527 Citations (Scopus) -
The impact of viral mutations on recognition by SARS-CoV-2 specific T cells
COVID-19 Genomics UK (COG-UK) Consortium, ISARIC4C Investigators, de Silva, T. I., Liu, G., Lindsey, B. B., Dong, D., Moore, S. C., Hsu, N. S., Shah, D., Wellington, D., Mentzer, A. J., Angyal, A., Brown, R., Parker, M. D., Ying, Z., Yao, X., Turtle, L., Dunachie, S., Aggarwal, D. & Ahmad, S. S. Y. & 21 others, , 19 Nov 2021, In: iScience. 24, 11, 103353.Research output: Contribution to journal › Article › peer-review
Open AccessFile68 Citations (Scopus)18 Downloads (Pure) -
2020
Comprehensive Assessment of the Antigenic Impact of Human Papillomavirus Lineage Variation on Recognition by Neutralizing Monoclonal Antibodies Raised against Lineage A Major Capsid Proteins of Vaccine-Related Genotypes
Godi, A., Boampong, D., Elegunde, B., Panwar, K., Fleury, M., Li, S., Zhao, Q., Xia, N., Christensen, N. D. & Beddows, S., Dec 2020, In: Journal of Virology. 94, 24, e01236-20.Research output: Contribution to journal › Article › peer-review
Open Access9 Citations (Scopus) -
Enhanced Detection of DNA Viruses in the Cerebrospinal Fluid of Encephalitis Patients Using Metagenomic Next-Generation Sequencing
Manso, C. F., Bibby, D. F., Mohamed, H., Brown, D., Zuckerman, M. & Mbisa, J., 12 Aug 2020, In: Frontiers in Microbiology. 11, 1879.Research output: Contribution to journal › Article › peer-review
Open AccessFile14 Citations (Scopus)78 Downloads (Pure) -
Multi-laboratory comparison of next-generation to sanger-based sequencing for HIV-1 drug resistance genotyping
Parkin, N. T., Avila-Rios, S., Bibby, D. F., Brumme, C. J., Eshleman, S. H., Harrigan, P. R., Howison, M., Hunt, G., Ji, H., Kantor, R., Ledwaba, J., Lee, E. R., Mat as-Florentino, M., Mbisa, J., Noguera-Julian, M., Paredes, R., Rivera-Amill, V., Swanstrom, R., Zaccaro, D. J. & Zhang, Y. & 2 others, , Jul 2020, In: Viruses. 12, 7, 694.Research output: Contribution to journal › Article › peer-review
Open Access35 Citations (Scopus) -
Surveillance of HIV-1 transmitted integrase strand transfer inhibitor resistance in the UK
Mbisa, J., Ledesma, J., Kirwan, P., Bibby, D. F., Manso, C., Skingsley, A., Murphy, G., Brown, A., Dunn, D. T., Delpech, V. & Geretti, A. M., 1 Nov 2020, In: Journal of Antimicrobial Chemotherapy. 75, 11, p. 3311-3318 8 p.Research output: Contribution to journal › Article › peer-review
Open Access21 Citations (Scopus) -
Technical Validation of a Hepatitis C Virus Whole Genome Sequencing Assay for Detection of Genotype and Antiviral Resistance in the Clinical Pathway
ICONIC Consortium & STOP-HCV Consortium, 9 Oct 2020, In: Frontiers in Microbiology. 11, 576572.Research output: Contribution to journal › Article › peer-review
Open Access14 Citations (Scopus) -
2019
Determining the Origins of Human Immunodeficiency Virus Type 1 Drug-resistant Minority Variants in People Who Are Recently Infected Using Phylogenetic Reconstruction
Mbisa, J., Kirwan, P., Tostevin, A., Ledesma, J., Bibby, D. F., Brown, A., Myers, R., Hassan, A. S., Murphy, G., Asboe, D., Pozniak, A., Kirk, S., Noel Gill, O., Sabin, C., Delpech, V. & Dunn, D. T., 13 Sept 2019, In: Clinical Infectious Diseases. 69, 7, p. 1136-1143 8 p.Research output: Contribution to journal › Article › peer-review
Open Access8 Citations (Scopus) -
Interpreting viral deep sequencing data with glue
Singer, J. B., Thomson, E. C., Hughes, J., Aranday-Cortes, E., McLauchlan, J., Da Silva Filipe, A., Tong, L., Manso, C. F., Gifford, R. J., Robertson, D. L., Barnes, E., Ansari, M. A., Mbisa, J., Bibby, D. F., Bradshaw, D. & Smith, D., Apr 2019, In: Viruses. 11, 4, 323.Research output: Contribution to journal › Article › peer-review
Open Access22 Citations (Scopus) -
Noninvasive detection of antibodies to human T-cell lymphotropic virus types 1 and 2 by use of oral fluid
Woo, T., Rosadas, C., Ijaz, S., Dicks, S., Tosswill, J., Tedder, R. & Taylor, G. P., 2019, In: Journal of Clinical Microbiology. 57, 12, e01179.Research output: Contribution to journal › Article › peer-review
Open Access6 Citations (Scopus) -
Pregnancy does not adversely impact diagnostic tests for HTLV-1/2 infection
Rosadas, C., Tosswill, J., Tedder, R. & Taylor, G. P., 2019, In: PLoS Neglected Tropical Diseases. 13, 9, e0007736.Research output: Contribution to journal › Article › peer-review
Open Access10 Citations (Scopus) -
Presence, persistence and effects of pretreatment HIV-1 drug resistance variants detected using next generation sequencing: A Retrospective longitudinal study from rural coastal Kenya
Hassan, A. S., Bibby, D. F., Mwaringa, S. M., Agutu, C. A., Ndirangu, K. K., Sanders, E. J., Cane, P., Mbisa, J. & Berkley, J. A., Feb 2019, In: PLoS ONE. 14, 2, e0210559.Research output: Contribution to journal › Article › peer-review
Open Access17 Citations (Scopus) -
Resolution by deep sequencing of a dual hepatitis E virus infection transmitted via blood components
Ledesma, J., Williams, D., Stanford, F. A., Hewitt, P. E., Zuckerman, M., Bansal, S., Dhawan, A., Mbisa, J., Tedder, R. & Ijaz, S., 1 Nov 2019, In: Journal of General Virology. 100, 11, p. 1491-1500 10 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Citations (Scopus) -
Seroprevalence of HCV, HBV and HIV in two inner-city london emergency departments
Cieply, L., Simmons, R., Ijaz, S., Kara, E., Rodger, A., Rosenberg, W., McGuinness, A., Mbisa, J., Ledesma, J., Ohemeng-Kumi, N., Dicks, S., Potts, H., Lattimore, S. & Mandal, S., 2019, In: Epidemiology and Infection. 147, e145.Research output: Contribution to journal › Article › peer-review
17 Citations (Scopus) -
2018
Interpretation of low reactivity in the Abbott Architect rHTLV I/II assay
Tosswill, J. H. C. & Taylor, G. P., Aug 2018, In: Transfusion Medicine. 28, 4, p. 326-330 5 p.Research output: Contribution to journal › Article › peer-review
Open Access17 Citations (Scopus) -
2017
A European multi-centre External Quality Assessment (EQA) study on phenotypic and genotypic methods used for Herpes Simplex Virus (HSV) drug resistance testing
Afshar, B., Bibby, D. F., Piorkowska, R., Ohemeng-Kumi, N., Snoeck, R., Andrei, G., Gillemot, S., Morfin, F., Frobert, E., Burrel, S., Boutolleau, D., Crowley, B. & Mbisa, J., Nov 2017, In: Journal of Clinical Virology. 96, p. 89-93 5 p.Research output: Contribution to journal › Article › peer-review
14 Citations (Scopus) -
Efficient and unbiased metagenomic recovery of RNA virus genomes from human plasma samples
Manso, C. F., Bibby, D. F. & Mbisa, J., 2017, In: Scientific Reports. 7, 1, 4173.Research output: Contribution to journal › Article › peer-review
Open Access28 Citations (Scopus) -
Enhanced surveillance of HIV-1 drug resistance in recently infected MSM in the UK
Cunningham, E., Chan, Y. T., Aghaizu, A., Bibby, D. F., Murphy, G., Tosswill, J., Harris, R. J., Myers, R., Field, N., Delpech, V., Cane, P., Noel Gill, O. & Mbisa, J., Jan 2017, In: Journal of Antimicrobial Chemotherapy. 72, 1, p. 227-234 8 p.Research output: Contribution to journal › Article › peer-review
Open Access19 Citations (Scopus) -
Human T-lymphotropic viruses (HTLV) in England and Wales, 2004 to 2013: Testing and diagnoses
Ireland, G., Croxford, S., Tosswill, J., Raghu, R., Davison, K., Hewitt, P., Simmons, R. & Taylor, G., 25 May 2017, In: Eurosurveillance. 22, 21Research output: Contribution to journal › Article › peer-review
Open Access15 Citations (Scopus) -
The Effect of Nucleic Acid Extraction Platforms and Sample Storage on the Integrity of Viral RNA for Use in Whole Genome Sequencing
Lewandowski, K., Bell, A., Miles, R., Carne, S., Wooldridge, D., Manso, C., Hennessy, N., Bailey, D., Pullan, S., Gharbia, S. & Vipond, R., 1 Mar 2017, In: Journal of Molecular Diagnostics. 19, 2, p. 303-312 10 p.Research output: Contribution to journal › Article › peer-review
Open Access17 Citations (Scopus) -
Time to first positive HIV-1 DNA PCR may differ with antiretroviral regimen in infants infected with non-B subtype HIV-1
Balasubramanian, R., Fowler, M. G., Dominguez, K., Lockman, S., Tookey, P. A., Huong, N. N. G., Nesheim, S., Hughes, M. D., Lallemant, M., Tosswill, J., Shaffer, N., Sherman, G., Palumbo, P. & Shapiro, D. E., 28 Nov 2017, In: AIDS. 31, 18, p. 2465-2474 10 p.Research output: Contribution to journal › Article › peer-review
Open Access8 Citations (Scopus) -
2016
Comparison of next-generation sequencing technologies for comprehensive assessment of full-length hepatitis C viral genomes
STOP-HCV Consortium, Oct 2016, In: Journal of Clinical Microbiology. 54, 10, p. 2470-2484 15 p.Research output: Contribution to journal › Article › peer-review
Open Access94 Citations (Scopus) -
De novo assembly of human herpes virus type 1 (HHV-1) genome, mining of non-canonical structures and detection of novel drug-resistance mutations using short- and long-read next generation sequencing technologies
Karamitros, T., Harrison, I., Piorkowska, R., Katzourakis, A., Magiorkinis, G. & Mbisa, J., Jun 2016, In: PLoS ONE. 11, 6, e0157600.Research output: Contribution to journal › Article › peer-review
Open Access45 Citations (Scopus) -
Rapid dissemination of human T-lymphotropic virus type 1 during primary infection in transplant recipients
Cook, L. B. M., Melamed, A., Demontis, M. A., Laydon, D. J., Fox, J. M., Tosswill, J. H. C., Freitas, D., Price, A. D., Medcalf, J. F., Martin, F., Neuberger, J. M., Bangham, C. R. M. & Taylor, G. P., 8 Jan 2016, In: Retrovirology. 13, 1, 3.Research output: Contribution to journal › Article › peer-review
Open Access58 Citations (Scopus) -
2015
Efficiency of hepatitis A virus removal in six sewage treatment plants from central Tunisia
Ouardani, I., Manso, C. F., Aouni, M. & Romalde, J. L., 1 Dec 2015, In: Applied Microbiology and Biotechnology. 99, 24, p. 10759-10769 11 p.Research output: Contribution to journal › Article › peer-review
23 Citations (Scopus) -
High-resolution analysis by whole-genome sequencing of an international lineage (Sequence Type 111) of pseudomonas aeruginosa associated with metallo-carbapenemases in the United Kingdom
Turton, J., Wright, L., Underwood, A., Witney, A. A., Chan, Y. T., Al-Shahib, A., Arnold, C., Doumith, M., Patel, B., Planche, T. D., Green, J., Holliman, R. & Woodford, N., 1 Aug 2015, In: Journal of Clinical Microbiology. 53, 8, p. 2622-2631 10 p.Research output: Contribution to journal › Article › peer-review
Open Access47 Citations (Scopus) -
2014
Recent infection testing algorithm (RITA) applied to new HIV diagnoses in England, Wales and Northern Ireland, 2009 to 2011
Aghaizu, A., Murphy, G., Tosswill, J., DeAngelis, D., Charlett, A., Gill, O., Ward, H., Lattimore, S., Simmons, R. D. & Delpech, V., 1 Jan 2014, In: Eurosurveillance. 19, 2Research output: Contribution to journal › Article › peer-review
Open Access37 Citations (Scopus) -
2013
Persistence of HIV-1 transmitted drug resistance mutations
Castro, H., Pillay, D., Cane, P., Asboe, D., Cambiano, V., Phillips, A., Dunn, D. T., Aitken, C., Pozniak, A., Webster, D., Dolling, D., Fearnhill, E., Porter, K., Chadwick, D., Churchill, D., Clark, D., Collins, S., Delpech, V., Geretti, A. M. & Goldberg, D. & 39 others, , 1 Nov 2013, In: Journal of Infectious Diseases. 208, 9, p. 1459-1463 5 p.Research output: Contribution to journal › Article › peer-review
Open Access87 Citations (Scopus) -
2012
Early estimates of seasonal influenza vaccine effectiveness in Europe among target groups for vaccination: Results from the I-MOVE multicentre case-control study, 2011/12
I-MOVE case–control studies team2, 2012, In: Eurosurveillance. 17, 15, p. 1-7 7 p.Research output: Contribution to journal › Article › peer-review
42 Citations (Scopus) -
The Recent Infection Testing Algorithm (RITA) in clinical practice: A survey of HIV clinicians in England and Northern Ireland
Garrett, N. J., Lattimore, S., Gilbart, V. L., Aghaizu, A., Mensah, G., Tosswill, J., Murphy, G. & Delpech, V., Aug 2012, In: HIV Medicine. 13, 7, p. 444-447 4 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Citations (Scopus) -
2011
Early estimates of seasonal influenza vaccine effectiveness in Europe, 2010/11: I-MOVE, a multicentre case–control study
I-MOVE case-control studies team, 17 Mar 2011, In: Eurosurveillance. 16, 11, 19818.Research output: Contribution to journal › Article › peer-review
Open Access44 Citations (Scopus)